Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30234g00039 ATGCTCGGTCAAGACGCCACCGCTACCACCGACCGCTCCGCCGCTCCTCGTCGGATGCCATATTCCCGCTCAGCTTCCTGGACTGATCGCTCTCGCCTCCCGCCACTCGCAAACAAGCCGAGATCTCTCCTGCCGCCGCTTCAGCCTCTCGCCATCAACAGGCGCAGCGCCGATGATTGGCCGAGCGCCGGATCTGACGATCTCGGCGTGTGGCCACTCCCACAGACTCCACGAGGCTCTACGGTGGGGTCATCGTCGGAGAATTCGGTGAAGGAGTTCCAGTTCAAGAGGGAGAAGCTGGCTTTCTATGACAAAGAGTGTTCTCGGATTGCGGAGCACGTGTACCTTGGGAGTGACACCGTGGCCAAGAACCACGACCTCCTGAGGCAGAACGGCATCACTCACGTGCTCAACTGTGTTGGCTTCGTTTGCCCTGAATATTTCAAGCGCGATTTTGTTTACAAAACTCTGTGGTTGCAGGACACTCCCACAGAAGACATAACCAGCATCCTCTACGATGTTTTCGATTACTTTGAGGACGTTAGGGAGCAAGGCGGCCGCGTCTTGGTTCACTGCTGCCAAGGTGTTTCCAGATCAACCTCTCTCGTCATCGCGTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGATGCGTTTCAGTATGTCAAGAATGCCAGAGGTGTCACCAATCCTAACATGGGTTTTGCGTGTCAGTTATTGCAGTGTCAGAAGCGGGTACATGCTACTCCCGCTAGTCCTAATTCCATTCTCAGGATGTATAGAATGGCTCCTCATTCGCCTTATGATCCTCTTCATTTGGTTCCTAAGATTGTGAACCATCCCTCTTCACAAGCCCTTGATTCTCGTGGTGCTTTCATTGTGCATGTGCCTTCTGCTATTTATGTTTGGACAGGCAAGAATTGCAATTCGGTTATGTCTTCAAATGCAAGAGGCGCTGCATCTCAGGTTGTTCGCTATGAGAGGGCTAACGGCCCTGTTCTTACCATCCATGAGTATGAGGAGCCGCCGGAGTTTTGGGTTGCTCTTGCCACTGCTGATCGTGACAAGGGAGATGATGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGAAGGAGAAGGAAGGTAGTATGGGGATTGATGGTGGCGGAGCTGTTCGTCCTAGGAAGGTTAATGAATATGATTTGGATTATGAGATATTCCAAAAGGCACTTGCTGGTGGTGTTGTTCCACCTTTCTCTGTGTCTAATGCAGGCTCAGAGACTTGCCTTCCGGCCAGAGAAAGCGGTTGGGGGAGACTGCGCCGGAAACTCGCCAGCGGTTTCATGAAAGGGTTGTTCACTTCATCCAAAAAGAACTCTACGAATGATGAAGCTGCTCTTGTCATGGAAGAAGCAAAAGCTGTTGATCCGAATGAATGTTCAGGGAGTTTAAAAGGCTATGTTGAAGTGATGGATCATTTTGTTCCTATTGTGCAGGTGGATTCATCATCACTCCCAACATCATCAGATTCTCTTCCTTGTTTCCTTAGCAGCGGTTCCAAGTCACCGACGCTCTCACCCTCAAGTTCTGATTACGCGAGTTCATTTACATTCTCACCTTCCTCAACAAATTGGTCTTCTCAGCAGCCATCACCTTCTACTTCTAGCATGGACTCAACCGAAACTATTCATGCCAAAGATGCTTCTTTATTGGACAGTTCCTCCTTGTTTCACAAGAAGGGTGATGTGTTTTTGGCTGATCAAACTTCCGGAGGTTCTAACTTCTTTTTGCCGTTGAAAGAGTCTTCACCCTCCATTGCAGAACGGAGAGGGAGTAATCCACCACCTCGCATGTTGCTCGCCGAATCATCCCATCCTCACCGGAGCAAGATCCATGTAAGATCAAAGTCATTTTCTTTGCCGGAATTGGATGATAGCTTTGTTAAAGAATGTTGA 1965 0.4997 MLGQDATATTDRSAAPRRMPYSRSASWTDRSRLPPLANKPRSLLPPLQPLAINRRSADDWPSAGSDDLGVWPLPQTPRGSTVGSSSENSVKEFQFKREKLAFYDKECSRIAEHVYLGSDTVAKNHDLLRQNGITHVLNCVGFVCPEYFKRDFVYKTLWLQDTPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHATPASPNSILRMYRMAPHSPYDPLHLVPKIVNHPSSQALDSRGAFIVHVPSAIYVWTGKNCNSVMSSNARGAASQVVRYERANGPVLTIHEYEEPPEFWVALATADRDKGDDDDDDDEEEEEEEEEEEEEEKEKEKEGSMGIDGGGAVRPRKVNEYDLDYEIFQKALAGGVVPPFSVSNAGSETCLPARESGWGRLRRKLASGFMKGLFTSSKKNSTNDEAALVMEEAKAVDPNECSGSLKGYVEVMDHFVPIVQVDSSSLPTSSDSLPCFLSSGSKSPTLSPSSSDYASSFTFSPSSTNWSSQQPSPSTSSMDSTETIHAKDASLLDSSSLFHKKGDVFLADQTSGGSNFFLPLKESSPSIAERRGSNPPPRMLLAESSHPHRSKIHVRSKSFSLPELDDSFVKEC 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30234g00039 654 SUPERFAMILY Actin depolymerizing proteins 252 362 - -
Stsc30234g00039 654 ProSiteProfiles Dual specificity protein phosphatase domain profile. 106 248 IPR020422 GO:0006470|GO:0008138
Stsc30234g00039 654 PANTHER MKPA PROTEIN 21 631 - -
Stsc30234g00039 654 MobiDBLite consensus disorder prediction 356 380 - -
Stsc30234g00039 654 Coils Coil 361 387 - -
Stsc30234g00039 654 SMART dsp_5 106 245 IPR020422 GO:0006470|GO:0008138
Stsc30234g00039 654 ProSitePatterns Tyrosine specific protein phosphatases active site. 190 200 IPR016130 GO:0016311|GO:0016791
Stsc30234g00039 654 MobiDBLite consensus disorder prediction 66 87 - -
Stsc30234g00039 654 MobiDBLite consensus disorder prediction 601 636 - -
Stsc30234g00039 654 Gene3D Severin 258 355 IPR029006 -
Stsc30234g00039 654 Gene3D Protein tyrosine phosphatase superfamily 78 248 IPR029021 -
Stsc30234g00039 654 CDD DSP 107 241 - -
Stsc30234g00039 654 MobiDBLite consensus disorder prediction 1 48 - -
Stsc30234g00039 654 MobiDBLite consensus disorder prediction 354 395 - -
Stsc30234g00039 654 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 165 226 IPR000387 GO:0016311|GO:0016791
Stsc30234g00039 654 MobiDBLite consensus disorder prediction 542 564 - -
Stsc30234g00039 654 Pfam Dual specificity phosphatase, catalytic domain 114 244 IPR000340 GO:0008138|GO:0016311
Stsc30234g00039 654 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 97 247 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30234g00039 Stsc-Chr30234 205332 207863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30234g00039 38 142 Protein tyrosine phosphatase (PTP) family AT3G55270 54.783 5.88e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30234g00039 - - gmx:100775448 723.005