Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30234g00026 ATGGGAAACTTGGACCCCACGGCCGAGGAGTTCTGGCCCAGAAACCATACCCACGGAGCTCATCATCATCCACCTCCACAACCCCATTCTCAGCCGTGGTACGGCTACCCTTACTTAGCTCATCTGTGTCCCACGTCATCACCTACGAGGTCGCTGATGCTAGGCTTGGTCCCCTCCGCCACGACGGCGGTTACAGAAGCATGGTTGATGAGGGAGCTTGGAGCCTTCGGGGACATCAGAGGGCTTCGGATGGAAGCGTTTGGCCACGGAATGGTTATTGCTATGGTTCACTTCTATGACCTCCGACACGCGGAGGCTGCCTTCACTGCCATTCTTGGCCATCACCAACAATACTATGGTGCTGTGTTGTGGGTCCAATACATGGTGCCCTCATCATGTGATGATGGCCATAACAACCAAGGGACGCTCCTGCTTTTCAATTTGGATTCACATATGGACGATATCTCTATCACTAATATCTTCCAGCCTTTTGGTGCTGTAAAGGAGGTAAGGCATGCCCCACTCATAAAGAACCAAAGATTCGTAGAGTTCTTTGACATAAGAGACGCGGCAAAGGCTTTCAAGAACATGAATGGCAACCAAATTCATGGGAAACCTCTTGTTATTCAATTCGGACCGCCATCAGTAGGAGGAGGACACTACCGGAAGTTTAAACCACCACGTGCGCTTGGATCTTTGCAGCAGCACAAGTTTTGGTCTCCTTTTGGCCGTGATGTTACAAAGGGAAGTTGTTATGATGATAAGACTCACAGTGAAGAATTAGTAGGAATGGGTTCTATGAATTTGGGTGATGATGAAGAGTTTGGGAATAATGGGGGCAAAGAAGCAGAGAGAAATTCTCCTACGAAGTGTGATGATGAGTCCATTGTAGGAGACATGAAGCAGCTTGAACAACAAACGGCAACAAGTAGGCGTCATAGGAAGGGAAAGCATGCAAATTTAAAGAAGCAGCATCATCATTATGAAACACGCCGCTACTTAATCAACCAACATGCTACTCATGATAAAGACTCTAGTAGCAGTAGTTTCATAGATTCTAGAACTACCGTCATGATTAAGAACATACCCAACAAGTACAGCCAGAAGTTACTATTGAGCATGTTGGATAACCACTGTAATCAATGCAACGAGCAGATTAGGGAAGGTGGCCATGACCACGAGCCTTTATCTTCCTATGATTTCCTCTACCTTCCAATTGATTTCAACAACAAGTGCAATGTGGGATACGGGTTTGTAAACATGACATCTGCGGAGGCAACAATGAGACTATACAAGGCCTTTCATGGGCAACAATGGCAAGTCTTCAATTCAAGAAAAATTTGCGAGATCACCTACGCCAGGATCCAGGGATTGGAAGCATTGAAGGAGCATTTCAAGAAGTCAAAGTTGGGATATGATATGGAGCATTACCTGCCAGTAGTGTTTTCACCACCTCGAGACGGTCGGCAGCTAACAGAGCCACTTGCAATAGTTGGCCATGCTCATCAGCAAATTCACAATAAACACCAATCGGACATTGCTACTATTGCTCCACCCTCTCATGTCAGCAGCACTAGTAGTAGTAGCAGCAGCGGCAGCCAAAGCGACGGCGTTGAAAGACAATCATGA 1629 0.4665 MGNLDPTAEEFWPRNHTHGAHHHPPPQPHSQPWYGYPYLAHLCPTSSPTRSLMLGLVPSATTAVTEAWLMRELGAFGDIRGLRMEAFGHGMVIAMVHFYDLRHAEAAFTAILGHHQQYYGAVLWVQYMVPSSCDDGHNNQGTLLLFNLDSHMDDISITNIFQPFGAVKEVRHAPLIKNQRFVEFFDIRDAAKAFKNMNGNQIHGKPLVIQFGPPSVGGGHYRKFKPPRALGSLQQHKFWSPFGRDVTKGSCYDDKTHSEELVGMGSMNLGDDEEFGNNGGKEAERNSPTKCDDESIVGDMKQLEQQTATSRRHRKGKHANLKKQHHHYETRRYLINQHATHDKDSSSSSFIDSRTTVMIKNIPNKYSQKLLLSMLDNHCNQCNEQIREGGHDHEPLSSYDFLYLPIDFNNKCNVGYGFVNMTSAEATMRLYKAFHGQQWQVFNSRKICEITYARIQGLEALKEHFKKSKLGYDMEHYLPVVFSPPRDGRQLTEPLAIVGHAHQQIHNKHQSDIATIAPPSHVSSTSSSSSSGSQSDGVERQS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30234g00026 542 SUPERFAMILY RNA-binding domain, RBD 343 439 IPR035979 GO:0003676
Stsc30234g00026 542 CDD RRM3_EAR1_like 354 457 IPR034458 -
Stsc30234g00026 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 214 IPR000504 GO:0003723
Stsc30234g00026 542 MobiDBLite consensus disorder prediction 516 542 - -
Stsc30234g00026 542 SUPERFAMILY RNA-binding domain, RBD 64 212 IPR035979 GO:0003676
Stsc30234g00026 542 PANTHER RNA RECOGNITION MOTIF-CONTAINING 30 329 - -
Stsc30234g00026 542 FunFam Terminal EAR1-like 1 292 462 - -
Stsc30234g00026 542 SMART rrm1_1 51 126 IPR000504 GO:0003723
Stsc30234g00026 542 SMART rrm1_1 142 210 IPR000504 GO:0003723
Stsc30234g00026 542 MobiDBLite consensus disorder prediction 1 28 - -
Stsc30234g00026 542 Gene3D - 280 464 IPR012677 -
Stsc30234g00026 542 Pfam RNA recognition motif 2 354 466 IPR007201 -
Stsc30234g00026 542 Gene3D - 133 223 IPR012677 -
Stsc30234g00026 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 207 IPR000504 GO:0003723
Stsc30234g00026 542 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30234g00026 Stsc-Chr30234 141616 144307 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30234g00026 41 212 Eukaryotic Initiation Factors Gene Family AT1G34140 26.768 1.86e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30234g00026 - - adu:107481599 673.315