Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30234g00008 ATGCAGAGCCAGCTTGTGTGTAATGGGTGTAGGAGCATTTTGCTTTATCCTAGAGGGGCAGCAAATGTGTGTTGTGCATTATGCAACACAATTACCTCTGTTCCTCCACCTGGAATGGAGATGTCTCAGCTTGTTTGTGGGGGATGTAGGACACTGCTAATGTACACACGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCAAACTGTAAACCTTGCACCACCAGCACCTAGTCAAGTCGCTCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCATATGGAGCTCCTTCTGTCAAATGTGCACTATGTCAATATGTTACTAATGTCAATATGAACAATGGAAGGCTTCCAATCCCAGTCCATAGACCTAATGGAACAACCAACTATGGGACAGTACCCTCTACTTCAACATCGATGCCCCAATCTCAGACCCAAACTGTCGTGATAGAGAATCCCATGACTGTTGATTCAAATGGAAAATTGGTTAGCAATGTTGTTGTTGGGGTTACAACAGATAAGAAATAA 534 0.4438 MQSQLVCNGCRSILLYPRGAANVCCALCNTITSVPPPGMEMSQLVCGGCRTLLMYTRGATSVRCSCCQTVNLAPPAPSQVAHVHCGNCRTTLMYPYGAPSVKCALCQYVTNVNMNNGRLPIPVHRPNGTTNYGTVPSTSTSMPQSQTQTVVIENPMTVDSNGKLVSNVVVGVTTDKK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30234g00008 177 PANTHER PROTEIN LSD1 2 176 IPR040319 -
Stsc30234g00008 177 Pfam LSD1 zinc finger 7 31 IPR005735 -
Stsc30234g00008 177 Pfam LSD1 zinc finger 85 109 IPR005735 -
Stsc30234g00008 177 Pfam LSD1 zinc finger 46 70 IPR005735 -
Stsc30234g00008 177 NCBIfam zinc finger domain, LSD1 subclass 82 112 IPR005735 -
Stsc30234g00008 177 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Stsc30234g00008 177 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30234g00008 Stsc-Chr30234 57837 60194 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Stsc30234g00008 zf-LSD1 4.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30234g00008 - - gmx:100776394 336.65