Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30234g00006 ATGGAAAATGCAGTTGAACCTCCTAGCAGTCCGCGACACAGAAATGTATCAGCTAGGTGGAATCCACTTGACGCATGTAGGCCTATAATTGATGAAGCTCCTGTGTTTTATCCTACTATTGAGGAATTTGAAGATACTCTTGGCTACATAGCTAAGATACGCCCCCAAGCTGAATCCTATGGCATATGTAGGATTGTACCCCCAGCTTCTTGGGTTCCACCGTGCCCGCTCAAAGAGAAAGATGTGTGGGAAAGTGCTACATTCCCCACCCGTATTCAACAAATTGACTTGCTTCAGAATAGGGAGCCAATGACAAAGAAAAGTAAGGGAAGGAAGCGGAAGCGTAGAAAGCATTCGAAAATGGGATCATGTAGGAGAAGTAGAAAGCCTAGTTCAGAAGCTGATGTTACTTCTCAGCCTGAACAGAAATTCGGATTCCAATCAGGTTCAGATTTCACACTCAAGGATTTTGAGCAATATGATAGATTTTTTAAGGATTCCTACTTTGGCCTGAATGATTCCACTGGAGATCGAAAGATTGGTGATAATGATCAGCAGAAGAGATGGGAGCCCAGTGTGGAGGTTATTGAGGGTGAATATTGGCGGATAGTGGAGAAACCCACAGATGAAGTTGAGGTCTATTATGGCGCTGACTTGGAAACCGGAGCACTTGGAAGTGGTTTCCCAAAGTCATCATCTGTTACTAAGAGCAATTCAGATCAATATGCTGTGTCTGGTTGGAATCTGAATAACTTCCCGAAATTGCCAGGCTCTGCATTATGTTATGAGGGAAGTGATATCTCGGGTGTTCTAGTTCCATGGTTGTATGTTGGAATGTGCTTTTCAACATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCACTTAATTATCTGCATTGGGGTGAGCCAAAAGTATGGTACGGTGTACCTGGAAGCCATGCTACAGCTTTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAGCAACCAAATCTACTCAATGAATTGGTGACTCTCTTATCTCCTTCAATTCTTAAATCTGAACGCGTGCCCATATATCGCACCGTCCAGCATTCCGGAGAATTCGTTGTTACTTTTCCAAGGGCATACCACTCTGGCTTCAACTGTGGTTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTGTTGATTGGTTTTTGCATGGCCAGAATGCTGTTGAGCTTTACAGTATGCAGCGTCGTAAGACATCATTATCACACGACAAGTTGTTATTTGGATCAGCTCAGGAAGCTGTAAGAGCTCTTTCAGATCTAACCCTTCACGGAAAAGAAAATCTCAAAAATTTTAAATGGAAAAGTTTCTGTGGGAAAGATGGAGTTCTGACCAAGGCACTTAAGTTGTTCTGCGTTATTGTTATTTTGACAGATGAGGATAAAGATGGAAAAGGAGAGACTTGA 1449 0.4286 MENAVEPPSSPRHRNVSARWNPLDACRPIIDEAPVFYPTIEEFEDTLGYIAKIRPQAESYGICRIVPPASWVPPCPLKEKDVWESATFPTRIQQIDLLQNREPMTKKSKGRKRKRRKHSKMGSCRRSRKPSSEADVTSQPEQKFGFQSGSDFTLKDFEQYDRFFKDSYFGLNDSTGDRKIGDNDQQKRWEPSVEVIEGEYWRIVEKPTDEVEVYYGADLETGALGSGFPKSSSVTKSNSDQYAVSGWNLNNFPKLPGSALCYEGSDISGVLVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGEPKVWYGVPGSHATALEDAMRKHLPDLFEEQPNLLNELVTLLSPSILKSERVPIYRTVQHSGEFVVTFPRAYHSGFNCGFNCAEAVNVAPVDWFLHGQNAVELYSMQRRKTSLSHDKLLFGSAQEAVRALSDLTLHGKENLKNFKWKSFCGKDGVLTKALKLFCVIVILTDEDKDGKGET 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30234g00006 482 Pfam jmjN domain 34 67 IPR003349 -
Stsc30234g00006 482 SUPERFAMILY Clavaminate synthase-like 248 428 - -
Stsc30234g00006 482 SMART JmjN_1 32 73 IPR003349 -
Stsc30234g00006 482 ProSiteProfiles JmjN domain profile. 33 74 IPR003349 -
Stsc30234g00006 482 Pfam JmjC domain, hydroxylase 274 390 IPR003347 -
Stsc30234g00006 482 MobiDBLite consensus disorder prediction 133 147 - -
Stsc30234g00006 482 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 466 - -
Stsc30234g00006 482 Gene3D Cupin 18 391 - -
Stsc30234g00006 482 ProSiteProfiles JmjC domain profile. 241 407 IPR003347 -
Stsc30234g00006 482 SMART cupin_9 241 407 IPR003347 -
Stsc30234g00006 482 MobiDBLite consensus disorder prediction 106 125 - -
Stsc30234g00006 482 MobiDBLite consensus disorder prediction 96 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30234g00006 Stsc-Chr30234 37548 40075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30234g00006 2 463 JUMONJI Transcription Factor Family AT1G30810 69.313 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc30234g00006 JmjC 5.6e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30234g00006 K11446 - gmx:100814590 803.127