Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30234g00005 ATGGATGAAAGATTCGTTCTGTTTCGTTATACTAAAGATGAGCTAATTACATTGGTTGAAGCACTAGAAGGAGACATGCATGCTATAAAAGTGTGGGAAAATCGAAAATATGGAATGGTTTCTGCTAATGCTGAAGATGCTTGCAAAAAGTTAGTCATGGACAACGAAGCTATGGCGGAGCAGGTGCTACCTGTGGATTTGAACATTGATCCTATGTCTGATGAGCATGATTTGCTGCATATTTCTGATAGCCATGATAATAAAGGTGTTCCAAATGTGGGGGAAGTCTGCTATTCAGTGGCCAAAAAGGAACAAGACAATATAGAACTCGGAGCTGGTGGCATCCTATCAGACTTGGACAATAAAGGTTTTTCACCATGTTCAAGGGATGTTGAAAATTTCTTTTCACTTGATGGCTATAGATCAATCGGGGTTGGTCTGCAAATGCATTCAGATTCAGGAGAGCTGTTCAACAGTGTATTTAAAGCTGGGGATGTCGACACCTCTGATAAAATTATTTCCCCGACAAACCAAAGCTTCTTAATCCAAGAGTTTGGTAATTCTGTTCAGCTTGTAAGTTTAGGCTCAATTATGCAGGGAAAGAGGTGGAGCAATGAACGTGCAATATATCCAAAAGGATTCAAGAGTCGCGTTAAGTTCTTTAGCATTCTTGATCCAACAAGACCCTGTTATTATGTTTCTGAAGTCTCTGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAACTGAAGTTTTCACAAACACATCAACGGATGAGTGTTGGGAAACAATTCTTGAGAGACTAAACCGTGAAATCGAGAGGCGGAAGAGTCTAGGTGAACAAGGACTCCCCCCCTTGGAGGTTTTGCAATGCATTAATGGTCATAAAATGTTTGGATTCCTTAACCCATCCATTATTCAGGCCATTGAAGCTCAAGATCCCAGTCATCAATGTAAAGAGTACTGGCATCATAAAGAACTTGCGTCTGAATCTTCAGGCGGTGGAAATGATGCGTCTAAGTGCTCAAATGGTTCAAGCAACTCCCTGGGTGATGTCAAGACCAAACTTTTCGGCGTCAATTTGATAAAGCCGGAGCAAGAAGATAACATAGGAGGAAATTTTCATTCATTTGAAGAGATGAAGTCATTGCTACAAGGATTCCTAAAAAAGGCCAGTCCTACTGAGTTGAGTGCAATGCTTAAACTATTTAGCTCTGATACACAAGTTACTCAATGGAGAGCGGCATTCGTAGCGCTGATTGAAGAGATCCAGAAAGGTTGTAGATAA 1305 0.4092 MDERFVLFRYTKDELITLVEALEGDMHAIKVWENRKYGMVSANAEDACKKLVMDNEAMAEQVLPVDLNIDPMSDEHDLLHISDSHDNKGVPNVGEVCYSVAKKEQDNIELGAGGILSDLDNKGFSPCSRDVENFFSLDGYRSIGVGLQMHSDSGELFNSVFKAGDVDTSDKIISPTNQSFLIQEFGNSVQLVSLGSIMQGKRWSNERAIYPKGFKSRVKFFSILDPTRPCYYVSEVSDAGFLGPLFKVTMEEHPTEVFTNTSTDECWETILERLNREIERRKSLGEQGLPPLEVLQCINGHKMFGFLNPSIIQAIEAQDPSHQCKEYWHHKELASESSGGGNDASKCSNGSSNSLGDVKTKLFGVNLIKPEQEDNIGGNFHSFEEMKSLLQGFLKKASPTELSAMLKLFSSDTQVTQWRAAFVALIEEIQKGCR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30234g00005 434 ProSiteProfiles FYR domain FYRN motif profile. 181 239 IPR003888 GO:0005634
Stsc30234g00005 434 Pfam F/Y rich C-terminus 243 327 IPR003889 GO:0005634
Stsc30234g00005 434 FunFam Putative lysine-specific demethylase JMJ16 187 325 - -
Stsc30234g00005 434 SMART fyrc_3 245 340 IPR003889 GO:0005634
Stsc30234g00005 434 Pfam F/Y-rich N-terminus 188 236 IPR003888 GO:0005634
Stsc30234g00005 434 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 186 339 IPR040092 -
Stsc30234g00005 434 ProSiteProfiles FYR domain FYRC motif profile. 241 331 IPR003889 GO:0005634
Stsc30234g00005 434 Gene3D - 185 325 - -
Stsc30234g00005 434 SMART fyrn_3 195 239 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30234g00005 Stsc-Chr30234 35561 37388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30234g00005 3 430 JUMONJI Transcription Factor Family AT4G20400 29.167 1.09e-53 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30234g00005 K11446 - gmx:100814590 479.174