Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30233g00032 ATGGAAGAACTTAAAGAACCTCAACCTCAATCCCTCGGTCAAGAAGATGAAAATGAAGTGGTTGCTGAAAGCTCTGCTTTTGTTAAAGGGGAACTTCCAGCAGAATATAGCGTGCCTCCCAAAGTTGATTCTGAAGTTGAAGTCCTTCACGAGAAGGTCACCAAGCAAGTAATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCATCCATTACAGGGGTTGGTCCGAAAGCACCCAGCACAAGTTTGAAGACACATGGCAGGAGCAGCGACCTATTGAGATGGTATTAGGAAAAGAAAAGAAAGAAATGACTGGCTTGGCTATTGGTGTGGCAAACATGAAAGATGGTGAGCGTGCATTGCTACGCGTGGGTTGGGAATTAGGATATGGCGAGGAAGGAAGTTTTTCTTTCCCCAATGTTCCTCCCAAGGCAGATTTAGTTTATGAAGTTGAGCTTATTGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGTAGCGATATGACTGTGGAGGAAAGGATTGGTGCAGCAGATCGTAGGAAGATGGATGGAAATGCTTTGTTTCAGCAAGAAAAATTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCATATATGGGAGATGACTTCNNNNNNNNNNAATATAGAGATATGGCTTTGGCTGTAAAGAATCCATGCCATCTTAACATGGCAGCTTGTCTGATTAAGCTGAACCGTTATGAAGAAGCTATAGGACAATGTACAATTGTACTGAGTGAGGATGAAAACAATGTCAAGGCTCTATTTAGGAGAGGCAAGGCTAGGGCAGCACTTGGTCAAACGGATGCTGCCAAGGAAGATTTTCAAAAGGCGCGCAAGTATGCCCCTGAAGACAAAGCCATTGCAAGAGAATTGAGGTTGCTTACCGAACACGACAAAGTTGTTTATCAAAAGCAGAAAGAACTATACAAAGGAATCTTTGGACCAAGGCCGGAACCAAGACCTAGTAATAAGGGAAGTGGTAACTTGCTGATTCTCATTTGGCAGTGGTTGCTTTCACTATTTTATGGGCTTCTTAATCTCTTCAAGCGTCAAAGCCCCAAGTCTGACTAA 1107 0.4273 MEELKEPQPQSLGQEDENEVVAESSAFVKGELPAEYSVPPKVDSEVEVLHEKVTKQVIKEGHGQKPSKYSTCFIHYRGWSESTQHKFEDTWQEQRPIEMVLGKEKKEMTGLAIGVANMKDGERALLRVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFQQEKLEEAMQQYEMAIAYMGDDFXXXXYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCTIVLSEDENNVKALFRRGKARAALGQTDAAKEDFQKARKYAPEDKAIARELRLLTEHDKVVYQKQKELYKGIFGPRPEPRPSNKGSGNLLILIWQWLLSLFYGLLNLFKRQSPKSD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30233g00032 368 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 96 337 IPR039663 -
Stsc30233g00032 368 SMART tpr_5 229 262 IPR019734 GO:0005515
Stsc30233g00032 368 SMART tpr_5 263 296 IPR019734 GO:0005515
Stsc30233g00032 368 SMART tpr_5 181 214 IPR019734 GO:0005515
Stsc30233g00032 368 SUPERFAMILY TPR-like 173 308 IPR011990 GO:0005515
Stsc30233g00032 368 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30233g00032 368 FunFam Peptidylprolyl isomerase 166 291 - -
Stsc30233g00032 368 SUPERFAMILY FKBP-like 30 167 - -
Stsc30233g00032 368 Pfam Tetratricopeptide repeat 264 296 IPR013105 -
Stsc30233g00032 368 Gene3D - 37 162 IPR046357 GO:0003755
Stsc30233g00032 368 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 69 161 IPR001179 GO:0003755
Stsc30233g00032 368 ProSiteProfiles TPR repeat profile. 263 296 IPR019734 GO:0005515
Stsc30233g00032 368 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 65 158 IPR001179 GO:0003755
Stsc30233g00032 368 Gene3D Tetratricopeptide repeat domain 163 291 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30233g00032 Stsc-Chr30233 203795 207600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30233g00032 34 326 Calmodulin-binding Proteins AT3G25230 32.039 3.46e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30233g00032 - - gmx:100790587 618.616