Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30233g00008 ATGGGCAAAAGCAGAACAAGTTGTTCTGTTTTTCTATCCCTTCTCATTCTCTCATCTTTTGTGGCAGAAATTCATGGTGGGAACAAGCAAGTTAAAGCACTTAACAATCTTCGTAAGTCCAAGGTTACAGATAGGAGTGAATTTGAGGTTCAAGATCTTCTGAACTATGATGAAGTTATTGATTCTCAAGAAGGACTTAAAGAGAAAGATAGGATCTTGAGGCTTCCAGGGCAACCCCAAGTGAAGTTTTCTCAGTATGGAGGCTATGTTACAATTGACAAATCCAATGGTCGTGCCTTTTATTACTACTTTGTTGAAGCTCAAACTTCTAATAAGGATTCATTGCCTCTTCTTCTTTGGCTAAATGGAGGTCCAGGTTGTTCATCTCTTGCCTATGGAGCATTTCAAGAACTTGGACCCTTCAGAGTAAATAGTGATGGCAAAACACTCTACAAAAATAGATATTCATGGAACTATGCTGCAAATGTTTTGTTCCTGGAATCACCTACTGGAGTGGGATTTTCTTACTCAAACACATCATCAGATTACAAGACAAATGGGGATAAGAAAACAGCAGCAGATAATTATTTGTTCTTGCTGAATTGGTTGGAAAGATTTCCTGAATACAAGAACAGAGAATTCTACATTTCTGGAGAGAGTTATGCTGGACATTATGTTCCTCAACTTGCACACACAATCCTTTACCATAATAAAAGGGCAAAAAGGACAATCATCAACCTCAAAGGAATATTGATTGGAAATGCAGTGATTAATGATGAGACTGATAATAAAGGAATGTATGATTTTCTTGCTACCCATGCAATAATATCAGACGAAACAGCAAATGATATTGAAAAATTTTGTGATTTCACATCCTCAAGTTCCAATAGTGAGTGTGATGATGCCTCTAATGATGCTACCAAGGATATTTACTACATTGATTTATACAACATTTATGCTCCTGAGTGCAAGAATGACAGTCTCACTGCTTATCCTAAGAAGCCTACTATTGTGACAGATCCATGTAGTGAGAGTTATGTGCAAGCATATATGAACAGGGAAGATGTTCAACAAGCACTCCATGCAAATGTCACTAAACTCAAATATTCTTGGGAGCTCTGCAGTGAGGTCATTGGAGGATGGAATGATGCCCCTACTACAGTTCTTCCACTTTTACATGAATTCCTCAATAATAACCTCAGAGTTTGGGTTTTCAGTGGTGACGTAGATGGAAGGGTTCCAGTGACTTCAACCAAGTATTCCATTAAAAAGATGAACCTTACCACCCAAACTAAATGGCATCCTTGGTTTGCCTATGGAGATGTTGGTGGATACACTGAAGTTTACAAAGGAGGCCTAACATTTGCTACAGTGAGAGAAGCAGGGCATCAAGTACCAAGTTACCAACCAGCAAGAGCTCTCTCTTTGATTATGCATTTCTTAAATGGCACCCCTCTTCCTGATACTAAAAGATATGATTAG 1482 0.3839 MGKSRTSCSVFLSLLILSSFVAEIHGGNKQVKALNNLRKSKVTDRSEFEVQDLLNYDEVIDSQEGLKEKDRILRLPGQPQVKFSQYGGYVTIDKSNGRAFYYYFVEAQTSNKDSLPLLLWLNGGPGCSSLAYGAFQELGPFRVNSDGKTLYKNRYSWNYAANVLFLESPTGVGFSYSNTSSDYKTNGDKKTAADNYLFLLNWLERFPEYKNREFYISGESYAGHYVPQLAHTILYHNKRAKRTIINLKGILIGNAVINDETDNKGMYDFLATHAIISDETANDIEKFCDFTSSSSNSECDDASNDATKDIYYIDLYNIYAPECKNDSLTAYPKKPTIVTDPCSESYVQAYMNREDVQQALHANVTKLKYSWELCSEVIGGWNDAPTTVLPLLHEFLNNNLRVWVFSGDVDGRVPVTSTKYSIKKMNLTTQTKWHPWFAYGDVGGYTEVYKGGLTFATVREAGHQVPSYQPARALSLIMHFLNGTPLPDTKRYD 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30233g00008 493 ProSitePatterns Serine carboxypeptidases, serine active site. 216 223 IPR018202 GO:0004185
Stsc30233g00008 493 FunFam Carboxypeptidase 388 483 - -
Stsc30233g00008 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 453 466 IPR001563 GO:0004185|GO:0006508
Stsc30233g00008 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 165 IPR001563 GO:0004185|GO:0006508
Stsc30233g00008 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 176 IPR001563 GO:0004185|GO:0006508
Stsc30233g00008 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 202 227 IPR001563 GO:0004185|GO:0006508
Stsc30233g00008 493 Pfam Serine carboxypeptidase 76 483 IPR001563 GO:0004185|GO:0006508
Stsc30233g00008 493 Gene3D alpha/beta hydrolase 66 325 IPR029058 -
Stsc30233g00008 493 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 73 470 IPR001563 GO:0004185|GO:0006508
Stsc30233g00008 493 SUPERFAMILY alpha/beta-Hydrolases 68 487 IPR029058 -
Stsc30233g00008 493 Gene3D - 342 378 - -
Stsc30233g00008 493 FunFam Carboxypeptidase 66 325 - -
Stsc30233g00008 493 Gene3D - 388 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30233g00008 Stsc-Chr30233 48945 53819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30233g00008 350 486 Calmodulin-binding Proteins AT2G22960 28.467 1.83e-13 67.0