Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30233g00006 ATGGGTAGGGGAAAGATCGAAATCAAAAGGATTGAGAATGCTAACAGCAGACAAGTTACATTCTCGAAGAGAAGAACAGGTCTTCTTAAGAAAGCTCAGGAACTCGCTATTCTCTGTGATGCTGAGGTTGCTGTCATCATCTTCTCTAATACTGGGAAGCTCTTTGAGTTCTCAAGTTCTGGCATGAAGCGAACACTTTCAAGGTACAACAAATGCACCGATTCTTCAGAGGTGGCTATAGTTGAATGTAAAGCAGAGAAGGAAGATTCTAAGATGGTGGAGGCTCTTAAAGATGAAATTGCAAAGCTAGAAACAAATCAATTACGGCTGCTGGGTAAAGACCTGACAGGATTGAGCATAAAAGAACTGCAACATCTAGAGCAGCAACTTAATGAAGGGTTATTGGCCGTCAAGGAGAGGAAGGAGGAATTACTTATGGAGCAACTGGAGCAATCTAGGGTTCAGGAACAGAGAGCTATGTTGGAGAATGAAACTTTGAGAAGACAGGTTGAGGAGCTTCGATGTCTGTTTCCGGTAACGGAACGTGTAGTCCCGTCTTATCTTCACTATCCCCAAGTGGAAAGGAAGAATGTTTTTGTAGATAATGGTGTTGTTAAGTTGCCAACCGATGTTAATCACAAAAGGAAGGGAACTGAGAGAGAAACATTTTCGAATGATTCGGAAAGCCAAGTTGCTCTACTCTGA 705 0.4227 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSEVAIVECKAEKEDSKMVEALKDEIAKLETNQLRLLGKDLTGLSIKELQHLEQQLNEGLLAVKERKEELLMEQLEQSRVQEQRAMLENETLRRQVEELRCLFPVTERVVPSYLHYPQVERKNVFVDNGVVKLPTDVNHKRKGTERETFSNDSESQVALL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30233g00006 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc30233g00006 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Stsc30233g00006 234 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc30233g00006 234 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Stsc30233g00006 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30233g00006 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc30233g00006 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc30233g00006 234 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Stsc30233g00006 234 Coils Coil 123 143 - -
Stsc30233g00006 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc30233g00006 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc30233g00006 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc30233g00006 234 Coils Coil 86 113 - -
Stsc30233g00006 234 Pfam K-box region 89 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30233g00006 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Stsc30233g00006 234 Coils Coil 149 176 - -
Stsc30233g00006 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30233g00006 Stsc-Chr30233 35392 38301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30233g00006 1 227 MADS-box Gene Family AT5G13790 54.508 8.75e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc30233g00006 K-box 6.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30233g00006 - - zju:107417456 335.88