Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30232g00022 ATGGCAGCCATGAACTCCTCTAGTGTATTGGCATGTAGCTACGCCATTTCGGGAGGGGCTTCTGGCTCCGAGCTGACTGGCAAGATTACTTCCTTGCCCTCTGTCTCCAGCAACAAGTTCCCTGTGATGAAGGTGAAGGCCCAGCAAGAGAGAACAACCCCCAAAGCCATGAAAGAATCTGAAATGGGAACAAGAAGAACTGCTCTTGTTTACTTGGCAGCCACACTTTTCAGCTCTGCTGCTGCTGCTGCTGCTGCTTCTTCTTCTGCCAATGCTGGTGTCATTGAAGATTACCTTGAGAAGAGCAAGGCCAACAAGGAATTGAATGACAAGAAAAGGTTAGCTACCAGTGGAGCAAATTTTGCAAGAGCATACACGGTCCAATTTGGCACTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGAAAGTGCCATTCCTTTCTGATGATTTGGAGCTTGAATGTGAAGGGAAAGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGGGAAACTGA 540 0.4648 MAAMNSSSVLACSYAISGGASGSELTGKITSLPSVSSNKFPVMKVKAQQERTTPKAMKESEMGTRRTALVYLAATLFSSAAAAAAASSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKWGN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30232g00022 179 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 45 177 IPR008796 GO:0009522|GO:0015979
Stsc30232g00022 179 Gene3D - 93 177 IPR044907 -
Stsc30232g00022 179 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 177 IPR008796 GO:0009522|GO:0015979
Stsc30232g00022 179 FunFam Photosystem I reaction center subunit N 93 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30232g00022 Stsc-Chr30232 184725 185870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30232g00022 1 148 Calmodulin-binding Proteins AT5G64040 62.252 1.80e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30232g00022 K02701 - pop:7466843 237.654