Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30231g00038 ATGGAGCAAGCAGTGAAGGATGTCAATGCCAACACCAGCATCCTTCATGGAACCAAACTTGTCCTCCACATGCAAGATTCCAATTGCAGTGGTTTCTTGGGCATGATTCAATCTTTGCGGTTCATGGAGACTGATGTAGCTGCTATAATAGGTCCCCAATCTTCTGTTGTAGCTCACATCATATCCCATGTTGCAAATGAGCTTCGAGTTCCTCTGGTGTCGTTTGCAGCCACAGATCCTACACTTACCTCCTTGCAGTTTCCATTCTTTGTGAGGACAACACAGAGTGATCTGTACCAAATGACTGCGGTTGCGGAGATCATAGACTATTATGGTTGGAAGGAGGTGATTGCCATCTATATAGATGATGATTACGGACGAAATGGTGTTTCTGTTTTGGATGATCAGCTGGCTGCTAGGCGCTGCAAAATATCCTACAAGGCTGCAATAAAATCTGGACCGGTTGACAGGGCTGATATCACGAATTTGCTTGTGCAAGTGGCTCTAATGCAATCTCGGGTCATTGTTCTTCATACAAATCCTGATTCTGGATTTATGGTCTTCAATGTGGCACATTATCTTGGGATGACAACCAATGGCTATGTCTGGATAGCCACGGATTGGCTCTCTTCTGTCTTGGATTCTACGGCTCTACCTTCAGAAACAATGGATATTCTTCAAGGAGTACTTGTTTTGCGCCAACATACACCTGATTCTGATAGAAAAAAAGCATTTAGCTCATGGTGGAAGAATTTTACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTATGCTTATGATTCTATCTTTCTGTTAGCGCATGCTCTCGATGCATTCTTTAGTCAGGGTGGGATTGTTTCCTGTACCAACTACACGAGTTTGCGCGATGATAAGCCTGGTGGTCTTAACCTTGATGCTATGAGCATTTTTGACAATGGAACACTTCTGTTGAAGAACATAGAGCGGATTGACTTTGTTGGATTAACAGGTCCTGTGAAATTCACATCAGACAGAAGCCTTGTTCGTCCTGCATATGATGTTATCAATGTGGTTGGAACTGGTGTTCATCGGGTTGGTTACTGGTCAAACTATTCTGGTCTCTCAATTGTGACTCCAGAGATATTGTATACTAAGCCAGCTAATAAATCAAGTGCAAATCAGCACCTTCATAGTGTCATATGGCCTGGAGATACATTATCAAAACCACGCGGATGGGTTTTCCCAAATAATGGAAGGCAATTGAGAATTGGTGTGCCTATTCGAGTTGGTTTTCGCGAATTTGTTTCGCCGGTTCGGGGAACTGATATGTTTAAAGGCTTCTGTATTGATGTATTCACTGCAGCTGTGAACTTGTTACCTTATGCTGTTCCATATCGCTTTGTCCCATTCGGAAATGGTCGCGAGAATCCAAGCTACACAGAACTTGTCAACTTAATCACCACCGGTTACTTTGATGGTGCTGTTGGTGACATTGCCATCACCACGAATCGGACAAAGAGTGTAGATTTCACACAGCCTTATGCTGCATCTGGACTAGTTGTGGTGGCCCCTTTTAAGAAGATAAATTCTGGCGGATGGTCTTTCCTTCGGCCATTTACACCTCTTATGTGGACTGTGACTGCTTGTTTCTTCTTTTTTATTGGGATAGTTGTATGGATACTGGAACATAGGATCAATGATGAGTTCAGAGGCCCACCAAAACAGCAATTTATAACAATTTTATGGTTTAGCCTTTCTACTCTCTTCTTTTCCCATAGAGAGAATACCATGAGCACTCTCGGTCGCTTGGTGGTTCTGATATGGTTGTTTGTGGTTTTGATCATAAACTCCAGCTACACTGCAAGTTTAACATCCATACTCACTGTGCAGCAGTTATCTTCCCCTATAAGTGGAATAGAAAGTTTAAAGAATAGTGATGAACGCATAGGATTCCAAGTGGGTTCATTCGCAGAGAGCTATTTGGCTGAGGACATTGGGATACCCGAAAAGAGACTCGTTCGGCTAGGATCTCCAGAAGAATATGCCAAGGCACTCCAACTTGGTTCTAAGAATGGAGGTGTTGGTGCCATTGTTGATGAAAGACCATACATTGAAATCTTCTTATCAACACAGTGCACATTCAAAATTGTAGGCCAAGAGTTCACCCGAAGTGGCTGGGGTTTTGCATTCCCTCGCGACTCCCCGTTGGCCGTTGATTTGTCAACTGCTATTCTTCAACTTTCCGAAACAGGGGATCTGCAGAGGATTCATGATAAGTGGATGACAATAAGCAGCTGTAGTTTAGATCATTCAGAGATCGATTCGGATAGGCTTCAGTTGAAAAGCTTCTGGGGTCTGTTCCTCCTTTGTGGGATGGCTTGCTTCTTAGCTCTTGTGATACATTTTGTGCAAATTATGGTGCGGATGCGCCATGCGCCTCCTCCTCCTGAAGCTGCCTCTAATAGTAGCTCCATTTCTGGTCGTTTTCAAAGATTCCTGTCACTGATTGATGAGAAGGAAGAGTCACCAAGGAGTGAGAGAAGAAAGAGGAATGGAGATGAAGTATCTGCTGATCATCAACTTAATGGCAGGCACCCAAAGAGGATACAGTTTGATTTAACACCCAACTCAAACACATAA 2622 0.4344 MEQAVKDVNANTSILHGTKLVLHMQDSNCSGFLGMIQSLRFMETDVAAIIGPQSSVVAHIISHVANELRVPLVSFAATDPTLTSLQFPFFVRTTQSDLYQMTAVAEIIDYYGWKEVIAIYIDDDYGRNGVSVLDDQLAARRCKISYKAAIKSGPVDRADITNLLVQVALMQSRVIVLHTNPDSGFMVFNVAHYLGMTTNGYVWIATDWLSSVLDSTALPSETMDILQGVLVLRQHTPDSDRKKAFSSWWKNFTGGSLGLHSYGLYAYDSIFLLAHALDAFFSQGGIVSCTNYTSLRDDKPGGLNLDAMSIFDNGTLLLKNIERIDFVGLTGPVKFTSDRSLVRPAYDVINVVGTGVHRVGYWSNYSGLSIVTPEILYTKPANKSSANQHLHSVIWPGDTLSKPRGWVFPNNGRQLRIGVPIRVGFREFVSPVRGTDMFKGFCIDVFTAAVNLLPYAVPYRFVPFGNGRENPSYTELVNLITTGYFDGAVGDIAITTNRTKSVDFTQPYAASGLVVVAPFKKINSGGWSFLRPFTPLMWTVTACFFFFIGIVVWILEHRINDEFRGPPKQQFITILWFSLSTLFFSHRENTMSTLGRLVVLIWLFVVLIINSSYTASLTSILTVQQLSSPISGIESLKNSDERIGFQVGSFAESYLAEDIGIPEKRLVRLGSPEEYAKALQLGSKNGGVGAIVDERPYIEIFLSTQCTFKIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSETGDLQRIHDKWMTISSCSLDHSEIDSDRLQLKSFWGLFLLCGMACFLALVIHFVQIMVRMRHAPPPPEAASNSSSISGRFQRFLSLIDEKEESPRSERRKRNGDEVSADHQLNGRHPKRIQFDLTPNSNT 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30231g00038 873 MobiDBLite consensus disorder prediction 831 873 - -
Stsc30231g00038 873 FunFam Glutamate receptor 652 759 - -
Stsc30231g00038 873 SUPERFAMILY Periplasmic binding protein-like II 391 756 - -
Stsc30231g00038 873 CDD GluR_Plant 413 754 - -
Stsc30231g00038 873 Gene3D - 96 368 - -
Stsc30231g00038 873 Pfam Ligand-gated ion channel 756 788 IPR001320 GO:0015276|GO:0016020
Stsc30231g00038 873 Pfam Bacterial extracellular solute-binding proteins, family 3 430 755 IPR001638 -
Stsc30231g00038 873 MobiDBLite consensus disorder prediction 831 860 - -
Stsc30231g00038 873 Gene3D - 524 655 - -
Stsc30231g00038 873 Pfam Receptor family ligand binding region 1 353 IPR001828 -
Stsc30231g00038 873 Gene3D - 410 523 - -
Stsc30231g00038 873 SUPERFAMILY Periplasmic binding protein-like I 1 407 IPR028082 -
Stsc30231g00038 873 Gene3D - 1 343 - -
Stsc30231g00038 873 FunFam Glutamate receptor 96 251 - -
Stsc30231g00038 873 PIRSF IGluLR_plant 1 872 IPR017103 -
Stsc30231g00038 873 FunFam Glutamate receptor 410 525 - -
Stsc30231g00038 873 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 19 831 IPR015683 -
Stsc30231g00038 873 FunFam Glutamate receptor 526 656 - -
Stsc30231g00038 873 Gene3D - 703 762 - -
Stsc30231g00038 873 CDD PBP1_GABAb_receptor_plant 1 371 IPR044440 -
Stsc30231g00038 873 SMART GluR_14 416 757 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30231g00038 Stsc-Chr30231 226675 229959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30231g00038 1 846 Ion Channels AT1G42540 65.035 0.0 1186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30231g00038 K05387 - gmx:100777478 1415.21