Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30231g00037 ATGGAGCAAGCAGTGAAGGATGTCAATGCCAACACCAGCATCCTTCATGGAACCAAACTTGTCCTCCACATGCAAGATTCCAATTGCAGTGGTTTCTTGGGCATGATTCAATCTTTGCGGTTCATGGAGACTGATGTAGCTGCTATAATAGGTCCCCAATCTTCTGTTGTAGCTCACATCATATCCCATGTTGCAAATGAGCTTCGAGTTCCTCTGGTGTCGTTTGCAGCCACAGATCCTACACTTACCTCCTTGCAGTTTCCATTCTTTGTGAGGACAACACAGAGTGATCTGTACCAAATGACTGCGGTTGCGGAGATCATAGACTATTATGGTTGGAAGGAGGTGATTGCCATCTATATAGATGATGATTACGGACGAAATGGTGTTTCTGTTTTGGATGATCAGCTGGCTGCTAGGCGCTGCAAAATATCCTACAAGGCTGCAATAAAATCTGGACCGGTTGACAGGGCTGATATCACGAATTTGCTTGTGCAAGTGGCTCTAATGCAATCTCGGGTCATTGTTCTTCATACAAATCCTGATTCTGGATTTATGGTCTTCAATGTGGCACATTATCTTGGGATGACAACCAATGGCTATGTCTGGATAGCCACGGATTGGCTCTCTTCTGTCTTGGATTCTACGGCTCTACCTTCAGAAACAATGGATATTCTTCAAGGAGTACTTGTTTTGCGCCAACATACACCTGATTCTGATAGAAAAAAAGCATTTAGCTCATGGTGGAAGAATTTTACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTATGCTTATGATTCTATCTTTCTGTTAGCGCATGCTCTCGATGCATTCTTTAGTCAGGGTGGGATTGTTTCCTGTACCAACTACACGAGTTTGCGCGATGATAAGCCTGGTGGTCTTAACCTTGATGCTATGAGCATTTTTGACAATGGAACACTTCTGTTGAAGAACATAGAGCGGATTGACTTTGTTGGATTAACAGGTCCTGTGAAATTCACATCAGACAGAAGCCTTGTTCGTCCTGCATATGATGTTATCAATGTGGTTGGAACTGGTGTTCATCGGGTTGGTTACTGGTCAAACTATTCTGGTCTCTCAATTGTGACTCCAGAGATATTGTATACTAAGCCAGCTAATAAATCAAGTGCAAATCAGCACCTTCATAGTGTCATATGGCCTGGAGATACATTATCAAAACCACGCGGATGGGTTTTCCCAAATAATGGAAGGCAATTGAGAATTGGTGTGCCTATTCGAGTTGGTTTTCGCGAATTTGTTTCGCCGGTTCGGGGAACTGATATGTTTAAAGGCTTCTGTATTGATGTATTCACTGCAGCTGTGAACTTGTTACCTTATGCTGTTCCATATCGCTTTGTCCCATTCGGAAATGGTCGCGAGAATCCAAGCTACACAGAACTTGTCAACTTAATCACCACCGGTTACTTTGATGGTGCTGTTGGTGACATTGCCATCACCACGAATCGGACAAAGAGTGTAGATTTCACACAGCCTTATGCTGCATCTGGACTAGTTGTGGTGGCCCCTTTTAAGAAGATAAATTCTGGCGGATGGTCTTTCCTTCGGCCATTTACACCTCTTATGTGGACTGTGACTGCTTGTTTCTTCTTTTTTATTGGGATAGTTGTATGGATACTGGAACATAGGATCAATGATGAGTTCAGAGGCCCACCAAAACAGCAATTTATAACAATTTTATGGTTTAGCCTTTCTACTCTCTTCTTTTCCCATAGAGAGAATACCATGAGCACTCTCGGTCGCTTGGTGGTTCTGATATGGTTGTTTGTGGTTTTGATCATAAACTCCAGCTACACTGCAAGTTTAACATCCATACTCACTGTGCAGCAGTTATCTTCCCCTATAAGTGGAATAGAAAGTTTAAAGAATAGTGATGAACGCATAGGATTCCAAGTGGGTTCATTCGCAGAGAGCTATTTGGCTGAGGACATTGGGATACCCGAAAAGAGACTCGTTCGGCTAGGATCTCCAGAAGAATATGCCAAGGCACTCCAACTTGGTTCTAAGAATGGAGGTGTTGGTGCCATTGTTGATGAAAGACCATACATTGAAATCTTCTTATCAACACAGTGCACATTCAAAATTGTAGGCCAAGAGTTCACCCGAAGTGGCTGGGGTTTTGTAAGTAATTAA 2178 0.4293 MEQAVKDVNANTSILHGTKLVLHMQDSNCSGFLGMIQSLRFMETDVAAIIGPQSSVVAHIISHVANELRVPLVSFAATDPTLTSLQFPFFVRTTQSDLYQMTAVAEIIDYYGWKEVIAIYIDDDYGRNGVSVLDDQLAARRCKISYKAAIKSGPVDRADITNLLVQVALMQSRVIVLHTNPDSGFMVFNVAHYLGMTTNGYVWIATDWLSSVLDSTALPSETMDILQGVLVLRQHTPDSDRKKAFSSWWKNFTGGSLGLHSYGLYAYDSIFLLAHALDAFFSQGGIVSCTNYTSLRDDKPGGLNLDAMSIFDNGTLLLKNIERIDFVGLTGPVKFTSDRSLVRPAYDVINVVGTGVHRVGYWSNYSGLSIVTPEILYTKPANKSSANQHLHSVIWPGDTLSKPRGWVFPNNGRQLRIGVPIRVGFREFVSPVRGTDMFKGFCIDVFTAAVNLLPYAVPYRFVPFGNGRENPSYTELVNLITTGYFDGAVGDIAITTNRTKSVDFTQPYAASGLVVVAPFKKINSGGWSFLRPFTPLMWTVTACFFFFIGIVVWILEHRINDEFRGPPKQQFITILWFSLSTLFFSHRENTMSTLGRLVVLIWLFVVLIINSSYTASLTSILTVQQLSSPISGIESLKNSDERIGFQVGSFAESYLAEDIGIPEKRLVRLGSPEEYAKALQLGSKNGGVGAIVDERPYIEIFLSTQCTFKIVGQEFTRSGWGFVSN 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30231g00037 725 Gene3D - 524 655 - -
Stsc30231g00037 725 SUPERFAMILY Periplasmic binding protein-like I 1 407 IPR028082 -
Stsc30231g00037 725 Pfam Receptor family ligand binding region 1 353 IPR001828 -
Stsc30231g00037 725 SMART GluR_14 416 725 IPR001320 GO:0015276|GO:0016020
Stsc30231g00037 725 FunFam Glutamate receptor 526 656 - -
Stsc30231g00037 725 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 19 723 IPR015683 -
Stsc30231g00037 725 FunFam Glutamate receptor 410 525 - -
Stsc30231g00037 725 Gene3D - 410 523 - -
Stsc30231g00037 725 Pfam Bacterial extracellular solute-binding proteins, family 3 430 705 IPR001638 -
Stsc30231g00037 725 FunFam Glutamate receptor 96 251 - -
Stsc30231g00037 725 Gene3D - 1 343 - -
Stsc30231g00037 725 Gene3D - 96 368 - -
Stsc30231g00037 725 Pfam Ligand-gated ion channel 537 640 IPR001320 GO:0015276|GO:0016020
Stsc30231g00037 725 CDD PBP1_GABAb_receptor_plant 1 371 IPR044440 -
Stsc30231g00037 725 FunFam Glutamate receptor 685 720 - -
Stsc30231g00037 725 SUPERFAMILY Periplasmic binding protein-like II 391 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30231g00037 Stsc-Chr30231 226675 229959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30231g00037 1 722 Ion Channels AT1G42540 66.253 0.0 1032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30231g00037 K05387 - gmx:102661260 1216.83