Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30231g00027 ATGGAGGCAGAGCAAGACACAATATTAGCACCTAACAATAACAATGGAATCGGAAGCTTATACGTCAAAGTCATGACAGATGAACAATTGGAAATGCTCCGGCAACAGATTTCAGTCTACGCCACCATCTGCGACCGCCTCGTTGAGANNNNNNNNNNATCTATCACCACTCAGCAGGATCTCGCAGGAATGAGGTTGGGGAATTTATACTGTGATCCACTCATGGCGGCGTGCTCCGGCGGCCACAAGATAACCGCGAGGCAGCGATGGACGCCGACGCCGATTCAACTTCAGATTCTGGAGCGGATATTTGAGGAAGGAAATGGCACTCCGAACAAACAGAAGATCAAGGAGATAACCGTTGAGCTCGGTCAACATGGCCAGATTTCAGAGACTAATGTCTATAATTGGTTCCAGAATAGAAGAGCTCGTTCCAAGCGCAAGCAACTCCTTCCTTCGCAGAATAATCTAGAAGCAGAAGCAGACGCAGAAGTCGAGTCTCCAAAGGAGGAGAAAAAGATGCCAGAAATTCAAGAAACAATTCAACTTCACTCCTATGAGAACTTGTCTCACACCACTAGTCCTGACATAGGATTTGAGCAACTCATGAGTAAACTAGAAGCTGCAGGCTGCTACAGCTCTTATTTTCTTTAG 654 0.4587 MEAEQDTILAPNNNNGIGSLYVKVMTDEQLEMLRQQISVYATICDRLVEXXXXSITTQQDLAGMRLGNLYCDPLMAACSGGHKITARQRWTPTPIQLQILERIFEEGNGTPNKQKIKEITVELGQHGQISETNVYNWFQNRRARSKRKQLLPSQNNLEAEADAEVESPKEEKKMPEIQETIQLHSYENLSHTTSPDIGFEQLMSKLEAAGCYSSYFL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30231g00027 217 Pfam Homeodomain 87 147 IPR001356 GO:0003677
Stsc30231g00027 217 ProSiteProfiles 'Homeobox' domain profile. 83 148 IPR001356 GO:0003677
Stsc30231g00027 217 MobiDBLite consensus disorder prediction 162 178 - -
Stsc30231g00027 217 MobiDBLite consensus disorder prediction 148 180 - -
Stsc30231g00027 217 Gene3D - 88 151 - -
Stsc30231g00027 217 CDD homeodomain 87 149 IPR001356 GO:0003677
Stsc30231g00027 217 SUPERFAMILY Homeodomain-like 86 149 IPR009057 -
Stsc30231g00027 217 PANTHER WUSCHEL-RELATED HOMEOBOX 13 11 200 IPR044559 GO:0003700
Stsc30231g00027 217 SMART HOX_1 85 152 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30231g00027 Stsc-Chr30231 188824 190137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30231g00027 4 149 Wox Gene Family AT4G35550 63.750 4.64e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc30231g00027 Homeodomain 3.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30231g00027 - - pvu:PHAVU_009G012200g 295.049