Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30231g00023 ATGAGCTGCTTCTCGTGCTTTGTTTCTCGCTCCAAAGATGCTAGCAGAGTTGAAATTGACACTGGTTCTCGATCTGCTGCTTCCTCAGGTTCTGTTGGAGGAGGGAAATGCACGGGTGCTACTGAGAGTGAAAGGAGGAAGAAGGAGGAGGCGAAGGGGAAGAGTACGAGTAATGGGAAGAACAGCACGGCGGCGGCGAGCTTTGGATTCAGGGAGCTAGCGGCGGCGACACGGGGTTTCAATGAGGTCAATTTGATCGGTGAGGGTGGTTTCGGACGTGTTTACAAGGGTCGTCTCTCTACTGGCCAGGTTGTTGCTGTAAAGCAGTTAAGTCATGATGGTCATCAGGGCTTTCAGGAATTTGTGATGGAGGTTCTTATGTTAAGCCTTCTTCACCATTCTAACCTTGTCAGGCTCATAGGCTACTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAGTATATGCCTATGGGTTGCCTTGAAGATCATCTCTTTGATCCTCCCCAAGACAAAGAACCACTGAGTTGGAGTACACGGATGAAGATTGCTGTTGGGGCTGCCCGAGGCCTTGAGTATCTCCATTGTAGAGCTGATCCGCCGGTTATTTATCGAGACTTGAAGTCTGCAAATATCTTATTAGACAATGAATTCAACCCCAAACTGTCAGATTTTGGACTTGCTAAACTTGGACCTGTTGGAGACAATACCCATGTTTCAACAAGGGTGATGGGAACATATGGCTACTGTGCACCAGAATATGCCATGAGTGGCAAATTAACTCTTAAATCTGATATATACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGGCGTAGGGCAATAGATAGTAGCAGAAGACCAGGAGAGCAAAACTTAATTTCATGGGCTCGCCCGTGTTTCAGCGACCGGAGAAAGTTCATACAATTGGTTGATCCCCTTTTGCAAGGAAACTTCCCCTTGCGCTGTTTACATCAGGCAATTGCCATTACTGCAATGTGTCTACAGGAGCAACCGAAAGTCCGGCCGCTAATCGGGGATATTGTTGTTGCATTGGAGTACCTAGCCTCTCAGAGCACCCCTGAAGTGCAAAGGCAGAACCCACCATCCCAATATTCAGAAATTCACAGAAACTAA 1140 0.4719 MSCFSCFVSRSKDASRVEIDTGSRSAASSGSVGGGKCTGATESERRKKEEAKGKSTSNGKNSTAAASFGFRELAAATRGFNEVNLIGEGGFGRVYKGRLSTGQVVAVKQLSHDGHQGFQEFVMEVLMLSLLHHSNLVRLIGYCTDGDQRLLVYEYMPMGCLEDHLFDPPQDKEPLSWSTRMKIAVGAARGLEYLHCRADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDSSRRPGEQNLISWARPCFSDRRKFIQLVDPLLQGNFPLRCLHQAIAITAMCLQEQPKVRPLIGDIVVALEYLASQSTPEVQRQNPPSQYSEIHRN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30231g00023 379 SMART serkin_6 80 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30231g00023 379 CDD STKc_IRAK 86 354 - -
Stsc30231g00023 379 FunFam Serine/threonine-protein kinase PBS1 156 371 - -
Stsc30231g00023 379 Pfam Protein kinase domain 81 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30231g00023 379 SUPERFAMILY Protein kinase-like (PK-like) 64 354 IPR011009 -
Stsc30231g00023 379 PANTHER OS07G0668900 PROTEIN 21 362 - -
Stsc30231g00023 379 Gene3D Transferase(Phosphotransferase) domain 1 156 375 - -
Stsc30231g00023 379 MobiDBLite consensus disorder prediction 40 55 - -
Stsc30231g00023 379 MobiDBLite consensus disorder prediction 21 36 - -
Stsc30231g00023 379 MobiDBLite consensus disorder prediction 18 63 - -
Stsc30231g00023 379 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524
Stsc30231g00023 379 ProSiteProfiles Protein kinase domain profile. 80 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30231g00023 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Stsc30231g00023 379 FunFam probable serine/threonine-protein kinase RLCKVII 51 155 - -
Stsc30231g00023 379 Gene3D Phosphorylase Kinase; domain 1 38 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30231g00023 Stsc-Chr30231 166488 169783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30231g00023 1 358 Glycoside Hydrolase AT3G07070 60.221 2.12e-154 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc30231g00023 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30231g00023 - - aip:107607467 592.808