Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30231g00022 ATGGGAAACTGTTTCCAGAAGCCGAGGAATAATAATAATAACAAGATTAACGAGCATCATGGTTTTAATTCCGATAATAATAATAACAAACCACATGCAGAAAGAATCAAGGAGAAGGGAGTGACGATGAAGAAGGATATGGCGGCGGTGAATACGGTGACAAGGAATCTAAGAATGTTCACGTTGGATGAGCTGAAAACTGCGACGAGGAATTTCAGACCGGATACTATGCTAGGTGAAGGTGGTTTTGGTCGTGTTTTTAAAGGGTGGGTTGACCAAAATACCCTCAAGCCTTCCAAAGTCGGAGTTGGAATCCCCGTCGCCGTTAAGAAGTCTAACCCCGACAGCCTCCAAGGCCTCCAAGAATGGCAGAGTGAGGTGAAATTCTTAGGGAAGTTTTCTCATCCGAACCTGGTTAAACTAGTTGGGTACTGCTGGGAGGAGAATCAATTCTTGCTAGTATATGAATACATGCAAAAGGGTAGCTTGGAAAATCACCTCTTCAGAAGTCCAGAACCACTTGCATGGGATATAAGGATAAAGATAGCCATTGGAGCTGCAAGAGGGTTGGATTTCTTACATACATCTGAGAAATCAGTCATCTATAGAGACTTCAAGTCCTCTAACATTCTTCTTGACGGGGATTATAACGCAAAGCTGTCAGATTTTGGATTGGCAAAGCTTGGTCCAGTCAACGGTAGATCCCATGTAACCACACGTGTCGTTGGAACCTACGGTTATGCCGCCCCTGAGTATATGGCAACAGGTCATTTGTACGTGAAAAGCGATGTATATGGATTTGGGGTAGTTTTATTAGAAATGTTAACGGGCCTAATTGCGTTAGACACAAATAGGCCCTCAGGTCAGCAGAATTTAGTAGAGTGGATTAAGCCATCTTTATATGAAAAGAGGAAATTAAAGAAAGTAATGGATCCAAATTTGAGTGAACAATATCCCATGAAAGCTGCTCTTGAAATGGCACACCTTATATTAAAATGCTTGGAAGAAGACCCAAAGAACCGACCCTCCATGGAACAGGTCTTACAAACATTAGAGAAGGTACAAATCATAAAATATAAACACAAGGTCAAGAAAGAGAGAGCCACAACAATGCATCATCAACATCAACAACGTCATCAGTAG 1143 0.4182 MGNCFQKPRNNNNNKINEHHGFNSDNNNNKPHAERIKEKGVTMKKDMAAVNTVTRNLRMFTLDELKTATRNFRPDTMLGEGGFGRVFKGWVDQNTLKPSKVGVGIPVAVKKSNPDSLQGLQEWQSEVKFLGKFSHPNLVKLVGYCWEENQFLLVYEYMQKGSLENHLFRSPEPLAWDIRIKIAIGAARGLDFLHTSEKSVIYRDFKSSNILLDGDYNAKLSDFGLAKLGPVNGRSHVTTRVVGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIALDTNRPSGQQNLVEWIKPSLYEKRKLKKVMDPNLSEQYPMKAALEMAHLILKCLEEDPKNRPSMEQVLQTLEKVQIIKYKHKVKKERATTMHHQHQQRHQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30231g00022 380 Gene3D Phosphorylase Kinase; domain 1 42 157 - -
Stsc30231g00022 380 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30231g00022 380 PANTHER OS01G0588500 PROTEIN-RELATED 33 355 - -
Stsc30231g00022 380 Pfam Protein tyrosine and serine/threonine kinase 76 351 IPR001245 GO:0004672|GO:0006468
Stsc30231g00022 380 SUPERFAMILY Protein kinase-like (PK-like) 51 354 IPR011009 -
Stsc30231g00022 380 MobiDBLite consensus disorder prediction 1 31 - -
Stsc30231g00022 380 FunFam Serine/threonine-protein kinase PBS1 158 370 - -
Stsc30231g00022 380 MobiDBLite consensus disorder prediction 1 29 - -
Stsc30231g00022 380 Gene3D Transferase(Phosphotransferase) domain 1 158 378 - -
Stsc30231g00022 380 ProSitePatterns Protein kinases ATP-binding region signature. 78 111 IPR017441 GO:0005524
Stsc30231g00022 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Stsc30231g00022 380 PIRSF ILK 11 372 - -
Stsc30231g00022 380 FunFam Serine/threonine-protein kinase BIK1 39 157 - -
Stsc30231g00022 380 CDD STKc_IRAK 78 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30231g00022 Stsc-Chr30231 158533 161296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30231g00022 3 351 Glycoside Hydrolase AT3G07070 45.205 1.50e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc30231g00022 PK_Tyr_Ser-Thr 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30231g00022 - - aprc:113865973 543.888