Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30231g00020 ATGGGAGATGGTGGAGTGTTATCATCAGCTACCATGCTGGAACCTCCTCCTTCTCCTCCACCACCACCACCACCACCACAAACTTCAGAGGTGGCAGCAACATCAACATCAATGGACTTTGATTATATCAATGAACTCTTTGTAGATGGTTGCTGGTTAGCAGCTTCTTCTTCTTCTCCTGCTGCTGCTGATGCTGCCGATGGATCTGCTGATTTCTACATGCAAAGTCCTTCTTTTTCAAACCCCATGTTTGACCCTTTCTCTTGGCCTTCCTTGGATACTGATCAGATTCAATCCCAAGAACATGAACATGAACAACAACCTCCTTTTAGCCATGACTTAGTTGTTGCTGCTGCTAATAGTTGTAGCCAGAACCAGTCTGAGATTCATTCTGTGGAAAACTATAATCCAAATCCAAATCCAAATCCTAATGAGTATTTCAGAAGGTGGTGGATTGCACCAAGTTCTAATCCAGGACCTGGATCTTATGTAGTTGAGAAGCTATTGAAGGCACTCATGTGTATCAAAGATGTGAACAGAAACAAAGACATGCTTATACAAATATGGATTCCAGTTATGAACAGAGGAGGCACTCAGATTCTCACAACCAATGGCCTTCCATTCTCACTTGAATCAAGGTCTATGAACCTTGCAAAGTACAGAGAAATCTCGGTGGCGTTCGAGTTCTCGGCCGAGGAGGATTCGAAGGACTTGGTGCCTGGATTGCCAGGGAGAGTTTACAAGGAGAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTCAGGAGCTATGAATATCCAAGAGTTGACCATGCTCAAGTCTATGATGTCAGAGGATCATTGGCACTTCCAATTTTTGAACAAGGTAGCAAGAATTGCTTAGGTGTTATTGAAGTTGTCATGACTCAGCAGCAAATCAATTATGGCCCTGAACTTGAAAGTGTTTGCAAAGCACTTGAGGCTGTTAATCTCAGAAGCTCAAAACTTCCAGCTATTCAGAATGTGAAGCATACATCATGTGAAAAGTCCTATGAAACTGCATTGCCTGAGATTCAAGAAGTATTAAGATCTGCATGTGAAATTCACAAATTGCCATTGGCACAGACATGGATTCCATGCATTCAACAAGGCAAAGAAGGATGCCGGCACTCCGAAGACAATTACCTACACTGCATATCTCCGGTGGAGCATGCTTGCTATGTTGGTCACCCTTCCATCCAATCCTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAAGGCCAAGGTGTTGCCGGCGGAGCATTCATGACGAATCAGCCTTGCTTCGCCACCGACATAACTTTGCTAAGCAAGACAGACTATCCACTTTCTCATCATGCAAGGATGTTTGGATTGCGCGCTGCGGTCGCCATTCGGCTGCGAAGCATCTATAATAGCTCAGATGACTTTGTTCTTGAGTTCTTCTTGCCTTTGGACTGCATTGACAGTGATGAACAAAGGAAGATGCTGACTTCATTGTCCTTGATCATACAAAGGGTTTGCCATAGCTTGAGGGTTATATCAGATAAGGAATTGGAGGAGGAAACTAATTTATCAGTTGAAGAAGTTATAGCTCATGAAGATAGTGGCACTTTTGCTAGTGCTGCAGTGTGGCCAGAACCATTACCAGAACCACTACAGAATCAAATTGTTGCTTCATTGGGAACTGAAGAAAAATCAAGTGAAACAATGGGGACAAGTTTCTCAGACCAAAGGCAGCAGCAACAGCAAGAGAGTTCTGTTTTGAAAGGGAACCTTGACTCTAATGGTGAGTGTTCTACTCATAATGAGGGAAACTTATCAAGTAAAACGGGAGAAAAGAAGAAGACCAAAGCAGAGAAAACTATCACTCTCCAAGTTCTTCGCCAACATTTCGCCGGAAGCCTAAAAGACGCGGCGAAGAACATTGGTGTTTGTACTACAACATTGAAAAGGATTTGCAGACAACATGGGATCAAACGTTGGCCTTCGAGGAAGATCAAGAAGGTTGGTCACTCCTTGCAGAAGCTTCAACTTGTGATTGATTCAGTCCAAGGTGCCTCTGGTGCATTCCAAATAGATTCCTTCTATTCAAAATTCCCAGACTTGGCTTCTTCTCCAAATCTATCAGGAACAAGCTTGTTCTCAAATCTCAAGCAAAGTGATAATAATAATCCAAACTCACTAAGCACACAGCCAGATCCTGGTTCCCTTAGCCCGGAAGGCGCATCGAAATCGCCCTCCTCTTCTTGCAGTCAGAGCTCAATCTCTAGCCATCCATGTTCCAGCTTGGCTGAGCAACAGCATCATAATCACACAAGTAATAATAACAATGTTGATAGTAGCAAAGATCAAATGGTGTTATTAGTTGGAGAGAATTCTAATGGTGATGGTTTGTTGAAGAGGATAAGAAGTGAAGCAGAATTGATGAAAAGCTTGAATGAAGAAGATAGAGCAAAAGTCATGCCAAGATCACAAAGTCAAGAAACACTACTTGGTCAACACAACCTTAAAAATGAGCACCATAGATCATTGTCAAGAACCAAAACTCAAAAGGAGGAATCTCACAGAGTGAAAGTGACATATGGAGATGAGAAAGCAAGGTTCAAGATGCCAAAGAGTTGGGGCTATGAAGATCTTGTGCAAGAAGTTGGTAGGAGATTCTGCATAAGTGACATGACCAAATTTGATCTGAAATATTTGGATGATGATTATGAATGGGTGCTACTAACCTGTGATGATGATTTAGAAGAATGCATTGAAGTTTGTCAATCATCTGAGAGCACCACAATCAAGCTTTGCCTTCAACTCTCTAATACTAATCATTGTATGAGAAACCCTTTAGAATTTAGATAG 2856 0.4226 MGDGGVLSSATMLEPPPSPPPPPPPPQTSEVAATSTSMDFDYINELFVDGCWLAASSSSPAAADAADGSADFYMQSPSFSNPMFDPFSWPSLDTDQIQSQEHEHEQQPPFSHDLVVAAANSCSQNQSEIHSVENYNPNPNPNPNEYFRRWWIAPSSNPGPGSYVVEKLLKALMCIKDVNRNKDMLIQIWIPVMNRGGTQILTTNGLPFSLESRSMNLAKYREISVAFEFSAEEDSKDLVPGLPGRVYKEKVPEWTPDVRFFRSYEYPRVDHAQVYDVRGSLALPIFEQGSKNCLGVIEVVMTQQQINYGPELESVCKALEAVNLRSSKLPAIQNVKHTSCEKSYETALPEIQEVLRSACEIHKLPLAQTWIPCIQQGKEGCRHSEDNYLHCISPVEHACYVGHPSIQSFHEACSEHHLLKGQGVAGGAFMTNQPCFATDITLLSKTDYPLSHHARMFGLRAAVAIRLRSIYNSSDDFVLEFFLPLDCIDSDEQRKMLTSLSLIIQRVCHSLRVISDKELEEETNLSVEEVIAHEDSGTFASAAVWPEPLPEPLQNQIVASLGTEEKSSETMGTSFSDQRQQQQQESSVLKGNLDSNGECSTHNEGNLSSKTGEKKKTKAEKTITLQVLRQHFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSKFPDLASSPNLSGTSLFSNLKQSDNNNPNSLSTQPDPGSLSPEGASKSPSSSCSQSSISSHPCSSLAEQQHHNHTSNNNNVDSSKDQMVLLVGENSNGDGLLKRIRSEAELMKSLNEEDRAKVMPRSQSQETLLGQHNLKNEHHRSLSRTKTQKEESHRVKVTYGDEKARFKMPKSWGYEDLVQEVGRRFCISDMTKFDLKYLDDDYEWVLLTCDDDLEECIEVCQSSESTTIKLCLQLSNTNHCMRNPLEFR 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30231g00020 951 MobiDBLite consensus disorder prediction 562 619 - -
Stsc30231g00020 951 Gene3D - 851 935 - -
Stsc30231g00020 951 MobiDBLite consensus disorder prediction 13 29 - -
Stsc30231g00020 951 MobiDBLite consensus disorder prediction 1 32 - -
Stsc30231g00020 951 CDD PB1_NLP 856 936 IPR034891 -
Stsc30231g00020 951 ProSiteProfiles PB1 domain profile. 855 938 IPR000270 GO:0005515
Stsc30231g00020 951 MobiDBLite consensus disorder prediction 836 856 - -
Stsc30231g00020 951 MobiDBLite consensus disorder prediction 562 607 - -
Stsc30231g00020 951 SMART PB1_new 855 938 IPR000270 GO:0005515
Stsc30231g00020 951 Pfam RWP-RK domain 622 670 IPR003035 -
Stsc30231g00020 951 ProSiteProfiles RWP-RK domain profile. 609 690 IPR003035 -
Stsc30231g00020 951 Pfam PB1 domain 856 936 IPR000270 GO:0005515
Stsc30231g00020 951 MobiDBLite consensus disorder prediction 714 781 - -
Stsc30231g00020 951 PANTHER PROTEIN NLP8 95 937 IPR045012 GO:0003700
Stsc30231g00020 951 SUPERFAMILY CAD & PB1 domains 848 938 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30231g00020 Stsc-Chr30231 131547 135574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30231g00020 26 935 NLP Transcription Factor Family AT4G35270 41.322 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc30231g00020 PB1 8.7e-19 CL0072