Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30231g00005 ATGGGTTGTTGCCAATCTAATCCGGGCCGTCAAAACTACCCTCACTCGCATCCGATTTCTTCATCCCCTAACGGCGCCAACAACAATAATAATAATAATAACAACAACGCCGCCGTTACTGGTGCCTCCGCCGCTGCCTCTGCCGCCCTAGACGTCCCTCCTTTCTCCGAGTTCTCCCTCTCGGACCTCAAATCTGCCACCAACGGCTTCAGCTCCGATCACATCGTCTCCGAGAGCGGCGACAAAGCCCCCAATGTGGTCTTCAAGGGTCGCCTCAACAATCACAACCGCCGTTTGATTGCCGTCAAGAGATTTTCCAAATTGGCATGGCCTGACCCCAAGCAGTTCGCTGATGAGGCTTGGAGTGTTGGAAAATTGAGGCACCCGAGGCTTGCGAATTTGATTGGGTATTGCTGTGATGGGGACGAGAGGCTTCTCGTTGCAGAATACATGCCTAACGACACTCTCGCCAAACATCTTTTTCACTCATTGGACTATTGCAGTAACAAAGGTCATCCATTGTACCATGATCTAAATGCCTACAGAGTTCTATTTGATGAGAATGGTGATCCACGACTTTCATGTTTTGGGCTGATTAAGAACAGTAGGGACGGGAAAAGTTATAGCACAAATCTTGCTTATACCCCTCCAGAGTACCTGAGAAATGGGAGGGTGACTCCAGAAAGTGTTATCTTCAGCTTTGGAACTGTATTATTGGATCTTCTAAGTGGCAAGCATATCCCTCCAAGTCATGCTCTTGACATGATAAGGGGTAAAAATATTCTACGCCTAATGGATTCACATTTGGAGGGGAACTTTTCCACTGATGAGGCAACTGTTGTTTTCGACCTTGCCTCTAAATGCTTGCAATATGAACCTCGAGAGCGGCCCAAGATCAATGACCTTGTTACAACTCTGTCCAAACTACAGAATAAACCCGATGTTCCATCATATGTCATGCTTGGCATTCCAAAGCACGAGGAAGCACCATCACCTCCAACCCCACAGCATCCTCTATCTCCAATGGGTGATGCTTGTTCTCGCATGGACCTTACAGCTATTCATCAGATTTTGTTGATGACACACTACAAAGATGATGAAGGAACTAACGAGTTATCTTTCCAAGAATGGACTCAGCAAATGAGGGATATGTTGGAGGCAAGAAAGCGGGGCGACTTGGCATTCCGTGATAAGGATTTTAAAACTTCAATTGAGTGTTACTCCCAGTTCATTGATGTGGGAACCATGGTGTCCCCAACCGTTTATGCACGGAGAAGTCTTTGCTATCTATTTTGCGATCAACCGGACGCCGCTCTGCGAGATGCAATGCAAGCTCAGTTGGTCTATCCGGACTGGGCGACGGCATTTTACATGCAGGCCGTTGCTCTGTCGAAATTAAACATGGATAAGGATGCAGCTGACATGCTGAACGAGGCCGCTTCCTTGGAAGAGAAACGGCAAAGAGGAGGGAAATGA 1476 0.4743 MGCCQSNPGRQNYPHSHPISSSPNGANNNNNNNNNNAAVTGASAAASAALDVPPFSEFSLSDLKSATNGFSSDHIVSESGDKAPNVVFKGRLNNHNRRLIAVKRFSKLAWPDPKQFADEAWSVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHSLDYCSNKGHPLYHDLNAYRVLFDENGDPRLSCFGLIKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNILRLMDSHLEGNFSTDEATVVFDLASKCLQYEPRERPKINDLVTTLSKLQNKPDVPSYVMLGIPKHEEAPSPPTPQHPLSPMGDACSRMDLTAIHQILLMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDLAFRDKDFKTSIECYSQFIDVGTMVSPTVYARRSLCYLFCDQPDAALRDAMQAQLVYPDWATAFYMQAVALSKLNMDKDAADMLNEAASLEEKRQRGGK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30231g00005 491 FunFam probable serine/threonine-protein kinase At4g35230 45 150 - -
Stsc30231g00005 491 Pfam Protein kinase domain 87 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30231g00005 491 Gene3D Phosphorylase Kinase; domain 1 46 150 - -
Stsc30231g00005 491 ProSiteProfiles Protein kinase domain profile. 73 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30231g00005 491 MobiDBLite consensus disorder prediction 1 38 - -
Stsc30231g00005 491 FunFam probable serine/threonine-protein kinase At4g35230 382 491 - -
Stsc30231g00005 491 SUPERFAMILY TPR-like 387 484 IPR011990 GO:0005515
Stsc30231g00005 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 29 488 IPR045845 GO:0004672|GO:0009742
Stsc30231g00005 491 Gene3D Tetratricopeptide repeat domain 382 489 IPR011990 GO:0005515
Stsc30231g00005 491 Coils Coil 465 485 - -
Stsc30231g00005 491 Gene3D Transferase(Phosphotransferase) domain 1 152 323 - -
Stsc30231g00005 491 SUPERFAMILY Protein kinase-like (PK-like) 53 317 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30231g00005 Stsc-Chr30231 27949 32564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30231g00005 9 332 Glycoside Hydrolase AT3G07070 30.997 1.26e-39 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Stsc30231g00005 Pkinase 7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30231g00005 K14500 - tcc:18591677 803.897