Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30230g00029 ATGATGTCGGAAGTTGCAAAGGACCCTGCGATTAAGCTCTTCGGGAAGACCATACCGGTGCCGGAGATTCCTACCGCATCCGGTGATGCTGCTGATGACAGTGTTGATCAGAATAACGCCTCTTCCACCAACTCCACCACCAGCAGCAGCGATGCACATGAGCTAGAAGAAATCGATAACAAGGAGACAATGGAAAATAAACCAAATGATGAAAAGAAGGAAGAAGCAATACGCACACAATCATCCGAAATTGCCAATCCAGATACAGCATCTGGTGAAGAATCTGTTAGCCCATCCACCGAGAAGGAAGCCATGGCCTTGAAAACTTCCAAGACCGAAGAAGAACAATCCGAGACAAGTAATTCACAAGATAAGACCCTCAAAAAGCCAGACAAAATTCTGCCGTGCCCCCGCTGTAATAGCATGGACACTAAGTTCTGTTACTACAACAACTATAACGTCAACCAACCCCGCCACTTCTGCAAGAACTGTCAGAGATACTGGACTGCTGGCGGAACCATGAGGAATGTGCCTGTAGGTGCCGGTCGCAGGAAGAATAAGAACTCTGCTTCTCACTATCGACAGATAACTGTCCCTGAAGCAGCAATGCAAAATAACAGGAAAGACTTGCCAAATGGAGTCCATCATCCTCCTTTGATGTGCAACGGCACAGTCCTTACATTCGGGTCTGATGCACCCTTGTGCGAGTCAATGGCATCTGTTTTGAACCTTTCTGAAAAAGCTGCACACAATTACATGAGGAATGGATTTGCTAAGCCTGAAGAGCTAAGAATTCGGGTTCCCACTGCGAGTGGAGAGAAAGGGGACAATCAATCCAATAAATCTTCAGTTAACTCAGCAAAACCAATGGGAGGTACAACCAATAGTGGTTCCCAAGAACAAACTATGCAGAATGGTCACAGCTTCACACCACAAATTCCCTACTTTCCCGGCCCCCCTTGGCCTCTCCCTTGGAATCCGGTGCAGTGGAACTCTTCGGTGCCACCACCTGCTTTTTGCCCACCAGGATTTGCCATGCCTTTCTATCCTGCAACAGCTTATTGGGGTGTCTCAGGTGCATGGAACATGCCATGGTTGGCACAACCATCATCACCTAAAGCTGCAGCCACAAACTCCGGGCCTAACTCCCCAACCTTGGGCAAACATTCAAGAGAAGAAAACTTGTTTAAATCAAATGAGCCGGGTGGTGGGAATGAAGACAAACAAAGCAAAGAGAATCATAAAGAAAAGTGTCTTTGGGTTCCAAAAACACTAAGAATCGATGATCCAGAAGAAGCAGCAAAAAGTTCTATATGGACTACTCTCGGAATCAGACATGATAAGGATGACTCAGTTCTTGGGGAAGGACTCTTCAAACCATTCCCTTCAAAGTACCACGAAAAGAGTCATCCGATGCACGCCTCACCCGTGTTGCAGGCCAATCCGGCAGCATTGTCTAGGTCACTAAACTTTCATGAGACTTCATAA 1488 0.4677 MMSEVAKDPAIKLFGKTIPVPEIPTASGDAADDSVDQNNASSTNSTTSSSDAHELEEIDNKETMENKPNDEKKEEAIRTQSSEIANPDTASGEESVSPSTEKEAMALKTSKTEEEQSETSNSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRQITVPEAAMQNNRKDLPNGVHHPPLMCNGTVLTFGSDAPLCESMASVLNLSEKAAHNYMRNGFAKPEELRIRVPTASGEKGDNQSNKSSVNSAKPMGGTTNSGSQEQTMQNGHSFTPQIPYFPGPPWPLPWNPVQWNSSVPPPAFCPPGFAMPFYPATAYWGVSGAWNMPWLAQPSSPKAAATNSGPNSPTLGKHSREENLFKSNEPGGGNEDKQSKENHKEKCLWVPKTLRIDDPEEAAKSSIWTTLGIRHDKDDSVLGEGLFKPFPSKYHEKSHPMHASPVLQANPAALSRSLNFHETS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30230g00029 495 MobiDBLite consensus disorder prediction 1 133 - -
Stsc30230g00029 495 MobiDBLite consensus disorder prediction 269 314 - -
Stsc30230g00029 495 PANTHER CYCLIC DOF FACTOR 2 1 495 IPR045174 GO:0003700|GO:0006355
Stsc30230g00029 495 MobiDBLite consensus disorder prediction 31 51 - -
Stsc30230g00029 495 MobiDBLite consensus disorder prediction 106 132 - -
Stsc30230g00029 495 MobiDBLite consensus disorder prediction 80 105 - -
Stsc30230g00029 495 ProSitePatterns Zinc finger Dof-type signature. 136 172 IPR003851 GO:0003677|GO:0006355
Stsc30230g00029 495 MobiDBLite consensus disorder prediction 371 389 - -
Stsc30230g00029 495 Pfam Dof domain, zinc finger 131 188 IPR003851 GO:0003677|GO:0006355
Stsc30230g00029 495 ProSiteProfiles Zinc finger Dof-type profile. 134 188 IPR003851 GO:0003677|GO:0006355
Stsc30230g00029 495 MobiDBLite consensus disorder prediction 369 417 - -
Stsc30230g00029 495 MobiDBLite consensus disorder prediction 52 79 - -
Stsc30230g00029 495 MobiDBLite consensus disorder prediction 272 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30230g00029 Stsc-Chr30230 238289 241460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30230g00029 8 495 C2C2-Dof Transcription Factor Family AT5G39660 45.437 8.95e-121 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30230g00029 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30230g00029 - - gmx:100788247 709.523