Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30230g00011 ATGGAGGGGATGTTAAGCCTCAACACTGAAGCAAAAGCAAGTGATGAAAATCCCAAGCAGCACTCTTCTCTTGGAAATTTTGCTAAGAAGTATCCTCCTAACTTTCCCAGAAAGGTATTGGCAGAGATAATAGGAACATATTTATTGGTGTTTGTGGGAAGTGGTTCAGCGGGGCTTAGTGCCATTGATGAAAACAAGGTATCAAAATTGGGAGCTTCACTTGCAGGAGGCTTCATTGTGACGGTTATGATCTATTCTATTGGACACATCTCAGGGGCACATATGAATCCAGCTGTTTCCTTAGCTTTTGCCACCATCAACCATTTTCCTTGGAAACAGGTACCATTTTATATTGCAGCCCAACTAACAGGAGCAATATCTGCTTCATACACACTGAGAGTGTTGCTTGAACCAGCAACACAAATTGGTGCCACGTCACCCTCAGGGTCAAATATTCAAGCACTTGTCATGGAGATTGTGGCCACATTCACTATGGTCTTCATATCTGCTGCTGTTGCCACTGACCCTAAAGCTATTGGTGAGCTATCAGGTGTAGCAGTAGGTTCTTCAGTTAGCATAGCAAGCATTGTAGCTGGACCAATATCAGGGGGGTCAATGAACCCAGCAAGGTCATTAGGTCCTGCAATTGCAACATCATCTTATAAGGGTATTTGGGTCTATTTTGTTGGACCAATCACTGGGGCACTCTTAGGGGTATGGTCTTACGGTGTGGTTCAAGACATAGATAATAAGCCACCTCCTCCTCCTCCTTCTGCATTGTTGGGCCAGAGAATCATTAGTGAAGCTGAGCATGTTGGTAACAAAGACAACTTCAGCTCTGTGTGA 846 0.4421 MEGMLSLNTEAKASDENPKQHSSLGNFAKKYPPNFPRKVLAEIIGTYLLVFVGSGSAGLSAIDENKVSKLGASLAGGFIVTVMIYSIGHISGAHMNPAVSLAFATINHFPWKQVPFYIAAQLTGAISASYTLRVLLEPATQIGATSPSGSNIQALVMEIVATFTMVFISAAVATDPKAIGELSGVAVGSSVSIASIVAGPISGGSMNPARSLGPAIATSSYKGIWVYFVGPITGALLGVWSYGVVQDIDNKPPPPPPSALLGQRIISEAEHVGNKDNFSSV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30230g00011 281 CDD MIP 37 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30230g00011 281 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Stsc30230g00011 281 Pfam Major intrinsic protein 34 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30230g00011 281 SUPERFAMILY Aquaporin-like 32 251 IPR023271 -
Stsc30230g00011 281 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Stsc30230g00011 281 PANTHER AQUAPORIN NIP2-1 17 246 IPR034294 -
Stsc30230g00011 281 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30230g00011 281 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30230g00011 281 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30230g00011 281 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30230g00011 281 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30230g00011 281 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30230g00011 281 MobiDBLite consensus disorder prediction 10 24 - -
Stsc30230g00011 281 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30230g00011 Stsc-Chr30230 98356 102103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30230g00011 37 277 Major Intrinsic Protein MIP AT5G37820 47.325 3.20e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30230g00011 K09874 - gmx:100788071 345.51