Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30230g00008 ATGGACATAGCAGCACAAACAACAACAACAATCAACAACAATAATAGCACTACTACAACAAAATCATCACCACCAACAACTGAAGAACAAGAAACTGAAACACCAACTAGGATTATCCAAAACACTACTACAACAACCACCACCATACCCAACACCACAACACCAACAAAGGCTTTAACTTTCTCAAATGGGGTTCTAAAACGCCACCACCCTCACCATATCTCCGCCGCCAACCACCAACACCTAGTTCTATACAAAGAATGCTTGAAGAACCACGCCGCCGCTCTCGGCGGCCACGCCCTCGACGGCTGCGGGGAGTTCATGCCTGCTCCAACTGCCACGGCCGGCGACCCTACATCCATCAAGTGTGCAGCCTGCGGCTGCCACCGCAACTTCCACCGCCGTGAGCCGGAGGACCCGCTTATCTCCTCCGCCTTCGAGTTTCATTCACAGAACCGCCACCACCCTCCACCACCGCCTCCTCCACCGCCTCACCGTAGCCCTAACTCGGCGTCTCCGCCGCCGATCTCGTCCGCTTACTACCACCACCCTTCAGCAGCACCTCACATGCTTCTGGCCCTGTCCGGAGCTGGCATCGCGGCGGCGCCGGAGAGCACGGCGACTCCAATTTCGGCGGCCGCAGCGTTAGGCTCTCCTCGGAAGAGGTTCAGGACGAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCAGAAGTTCGCAGAGCGTGTTGGGTGGAAGATGCAGAAGAGAGACGATGATTTGGTTCAAGAGTTTTGCAGCGAGGTTGGTGTTGATCGCGGTGTTCTCAAAGTTTGGATGCATAACAACAAGAACAATCTCGCCAAGAAAGAGAGTAATGGTGGTGGTGGTAGTGCTGCCATTAATGGTGGTGGAAGAAGCCTTATCATGGAGGAAGATCCTAATCCTAATAACAATAACAATAACAATGGTGATGATGTTGTTGGTGTTGGTGTTAATGGTGGTGGTGCTAATGGTTCTTCTTCTTCATCTTGA 1011 0.5252 MDIAAQTTTTINNNNSTTTTKSSPPTTEEQETETPTRIIQNTTTTTTTIPNTTTPTKALTFSNGVLKRHHPHHISAANHQHLVLYKECLKNHAAALGGHALDGCGEFMPAPTATAGDPTSIKCAACGCHRNFHRREPEDPLISSAFEFHSQNRHHPPPPPPPPPHRSPNSASPPPISSAYYHHPSAAPHMLLALSGAGIAAAPESTATPISAAAALGSPRKRFRTKFSQEQKEKMQKFAERVGWKMQKRDDDLVQEFCSEVGVDRGVLKVWMHNNKNNLAKKESNGGGGSAAINGGGRSLIMEEDPNPNNNNNNNGDDVVGVGVNGGGANGSSSSS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30230g00008 336 MobiDBLite consensus disorder prediction 278 336 - -
Stsc30230g00008 336 MobiDBLite consensus disorder prediction 153 171 - -
Stsc30230g00008 336 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 136 IPR006456 -
Stsc30230g00008 336 Pfam ZF-HD protein dimerisation region 83 137 IPR006456 -
Stsc30230g00008 336 ProSiteProfiles 'Homeobox' domain profile. 218 282 IPR001356 GO:0003677
Stsc30230g00008 336 MobiDBLite consensus disorder prediction 149 180 - -
Stsc30230g00008 336 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 278 - -
Stsc30230g00008 336 NCBIfam homeobox domain, ZF-HD class 220 277 IPR006455 -
Stsc30230g00008 336 FunFam Zinc-finger homeodomain protein 2 208 281 - -
Stsc30230g00008 336 SUPERFAMILY Homeodomain-like 211 281 IPR009057 -
Stsc30230g00008 336 MobiDBLite consensus disorder prediction 304 319 - -
Stsc30230g00008 336 MobiDBLite consensus disorder prediction 1 35 - -
Stsc30230g00008 336 Gene3D - 208 282 - -
Stsc30230g00008 336 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 85 136 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30230g00008 Stsc-Chr30230 61019 62029 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30230g00008 1 276 ZF-HD Transcription Factor Family AT5G15210 49.291 4.66e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc30230g00008 ZF-HD_dimer 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30230g00008 - - adu:107486720 402.905