Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30230g00007 ATGAGGAGGTACAATCTTAGGAGCAACGACTCATCAAGAAACCAAGAAAGCAACAACAACGATTCAAGAGACGTAAGAACATACGTGAGATATGGAGAGTGTGAGAAGAACCAAGCGGAGCGAATCGGAGGCCACGCCGTCGACGGTTGCAGAGAGTTCATGGCAAGCGGAGCGGAAGGAACACCTCAAGCTCTCACTTGTGCCGCTTGTGGCTGCAACAGAAGCTTCCATAAACTTGAAGTTCGAACTGAAGTTGTCGCCAGTAGCCATGGCCGCCATGGCCAACGCTTACAAGAACAGCGTTAG 306 0.5065 MRRYNLRSNDSSRNQESNNNDSRDVRTYVRYGECEKNQAERIGGHAVDGCREFMASGAEGTPQALTCAACGCNRSFHKLEVRTEVVASSHGRHGQRLQEQR 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30230g00007 101 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30230g00007 101 Pfam ZF-HD protein dimerisation region 29 80 IPR006456 -
Stsc30230g00007 101 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 89 - -
Stsc30230g00007 101 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 31 80 IPR006456 -
Stsc30230g00007 101 MobiDBLite consensus disorder prediction 10 25 - -
Stsc30230g00007 101 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 30 80 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30230g00007 Stsc-Chr30230 43535 43954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30230g00007 25 86 Zinc finger-homeobox gene family AT3G28917 74.603 3.36e-26 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc30230g00007 ZF-HD_dimer 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30230g00007 - - ahf:112740680 181.03