Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30230g00006 ATGAAGAAGTATTACATTAAGAGCAACCAACCTGGATCCTCCACCATGAAGGTTTATGTGACATACGGCGAGTGCCAAAAGAACCATGCCGAGTGGCTTGGAGGGTACGCGCTCGACGGTTGTCAAGCTTTCATGCCGAGCGGAGAAGAAGGGACGCCGGCTGCTCTCACCTGTGCTGCTTGTAACTGCCTTAGGAGCTTCCACAAGCTTGAAGTGCACACTGAAATCGAACAGAATCATGGCTCTCCTCCACAAGAGGGAGCTAGGGCTTAA 273 0.5165 MKKYYIKSNQPGSSTMKVYVTYGECQKNHAEWLGGYALDGCQAFMPSGEEGTPAALTCAACNCLRSFHKLEVHTEIEQNHGSPPQEGARA 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30230g00006 90 Pfam ZF-HD protein dimerisation region 20 71 IPR006456 -
Stsc30230g00006 90 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
Stsc30230g00006 90 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 76 - -
Stsc30230g00006 90 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30230g00006 Stsc-Chr30230 34252 34685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30230g00006 20 87 Zinc finger-homeobox gene family AT3G28917 65.217 2.24e-27 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc30230g00006 ZF-HD_dimer 4.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30230g00006 - - ahf:112740679 132.88