Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30230g00005 ATGGTCCAAGATGCCATTAGTGAGAAGTTGGGTAATTTCATTCACTACTTAGGCACATTTATTTCTGGGTTTGCTGTGGGATTCAGTGCTGTGTGGCAATTAGCACTTATCACTCTTGTTGTAGTTCCTATGATTGCTGTCATTAGAGCCATTCACACAACCACTTTGGCCAAGCTCTATACTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGGAACATTGCTGAACAGTTCAATAATAGACCAAAAGTGGTTTTGGCATTCGTTGGGGAGAATAGAGCACTGCAAGGTTACTCATTTGCATTGAGGATTGCTCAGCAGCTTGGATACAAAACTGGATTTGCAAAGGGAACAGGATTGGGTGCCACTTACTTTTTGAGTTATGAACGTCCCTCTGTGACTAGTTTTCATTCGTACAGGGCTTTATCCCAGTCTGCACCAAGCATAGCTGCATTTGGTTATGATGTAAGGGAAGTTACTGGTTTTGCTAGCTTTAAACCTGTTGTTACTAAGTCTTGTGACTTAAAGGGTGTAGCTATGATCACTACTAGTGACTCTAGTGGTGCTGTTGCTTCTATACATGGGAGATTTCATGTAGCTACCGAGGAAACTGAGGAGGACTACATGATGTGA 630 0.4222 MVQDAISEKLGNFIHYLGTFISGFAVGFSAVWQLALITLVVVPMIAVIRAIHTTTLAKLYTKSQEALSQAGNIAEQFNNRPKVVLAFVGENRALQGYSFALRIAQQLGYKTGFAKGTGLGATYFLSYERPSVTSFHSYRALSQSAPSIAAFGYDVREVTGFASFKPVVTKSCDLKGVAMITTSDSSGAVASIHGRFHVATEETEEDYMM 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30230g00005 209 Gene3D ABC transporter type 1, transmembrane domain 1 128 IPR036640 GO:0005524|GO:0016020
Stsc30230g00005 209 Pfam ABC transporter transmembrane region 2 127 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30230g00005 209 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 127 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30230g00005 209 SUPERFAMILY ABC transporter transmembrane region 2 127 IPR036640 GO:0005524|GO:0016020
Stsc30230g00005 209 PANTHER ABC TRANSPORTER B FAMILY 2 126 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30230g00005 Stsc-Chr30230 25866 27172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30230g00005 1 127 Calmodulin-binding Proteins AT2G36910 74.016 3.90e-57 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30230g00005 K05658 - gmx:100777382 197.208