Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30230g00001 ATGGGAAGACCACCTTGTTGTGATAAAGAAGGTGTGAAGAAAGGTCCTTGGACTCCTGAAGAAGATATCATTTTGGTCTCTTATATTCAAGAACATGGTCCTGGCAATTGGAGGGCTGTTCCTACCAACACAGGGTTATCAAGATGTAGCAAGAGTTGTAGGCTTAGATGGACTAATTACTTGAGACCTGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAAAAGATGATTATCCATCTTCAAGATCTCTTAGGAAACAGATGGGCTGCAATTGCTTCATACCTACCACAAAGGACAGACAATGATATTAAGAATTATTGGAACACGCATCTGAAGAAGAAGCTCAAAAAGTTGCAAACTCCGAGTTCTTCTGGAGTTTGCAACTTCGGAGAAGCCGGAACCGGGTACTCTACTTCGAGCCCGGTTCGCGGCCAGTGGGAGAGGAGACTCCAAACCGACATCCACATGGCGAAAAGGGCTCTCAGTGAAGCCCTTTCGCCGGAGAATAATAACAATAACAACAACAATAAGCTTTCTTCTTGCTTCTTCTCGTCGTCGACGTCATCAATTTCTTCGTCAAACCCATCTTCAAAATGCGAGAGCTCATCAATAACAAAGCCAACACCATCAACTTTGTGCTATGCTTCAAGTGCTGAGAACATAGCTCGTTTGTTGAAAGGTTGGATGAAGAATCCAGCAACAAATAACAACAACAAGAAGTCTTGTTCAAGAACTCAAAAAACTGAAAATAGTAGCAATGATAACAGTGTTGAGATGTCTGAAGCATTTGAATCATTGTTTGGTTTGGAGTCATTGGATTACTCATCAAATGCTACTACTACTACTACTAATTCTGAATTCTCTCATCAATCTTTGTCTCCTGAAGATAATAATGTTTTTCAAGAAGATGAAAGAAAGCCTGAGATTATTGGTGCTGCTGCTTGTGGTGGTGATGATGATGAAATCATGCCATTCTCTTTGCTTGAGAAGTGGCTTCTTGAAGAGGTTGGTAGCCAAGACCAGAAAGTTGTTATTAGTGGCGATGCCAAATTAATCTTCTAA 1065 0.4103 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTPSSSGVCNFGEAGTGYSTSSPVRGQWERRLQTDIHMAKRALSEALSPENNNNNNNNKLSSCFFSSSTSSISSSNPSSKCESSSITKPTPSTLCYASSAENIARLLKGWMKNPATNNNNKKSCSRTQKTENSSNDNSVEMSEAFESLFGLESLDYSSNATTTTTNSEFSHQSLSPEDNNVFQEDERKPEIIGAAACGGDDDEIMPFSLLEKWLLEEVGSQDQKVVISGDAKLIF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30230g00001 354 Gene3D - 68 127 - -
Stsc30230g00001 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc30230g00001 354 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc30230g00001 354 MobiDBLite consensus disorder prediction 231 258 - -
Stsc30230g00001 354 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc30230g00001 354 CDD SANT 16 61 IPR001005 -
Stsc30230g00001 354 FunFam MYB-related transcription factor 13 66 - -
Stsc30230g00001 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 256 - -
Stsc30230g00001 354 MobiDBLite consensus disorder prediction 189 208 - -
Stsc30230g00001 354 Gene3D - 13 66 - -
Stsc30230g00001 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Stsc30230g00001 354 FunFam Transcription factor MYB30 68 126 - -
Stsc30230g00001 354 MobiDBLite consensus disorder prediction 279 302 - -
Stsc30230g00001 354 CDD SANT 69 111 IPR001005 -
Stsc30230g00001 354 SMART sant 66 114 IPR001005 -
Stsc30230g00001 354 SMART sant 13 63 IPR001005 -
Stsc30230g00001 354 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc30230g00001 354 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc30230g00001 354 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc30230g00001 354 MobiDBLite consensus disorder prediction 230 258 - -
Stsc30230g00001 354 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30230g00001 Stsc-Chr30230 3406 4752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30230g00001 1 353 MYB Transcription Factor Family AT5G62470 50.670 1.42e-102 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30230g00001 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30230g00001 K09422 - gmx:778080 388.652