Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30229g00033 ATGGGTAGGGCAACAAAATGGTTTCGCGGGCTTTTCGGTCTGAGAAGGTCTTCGGACTCTGCTGCACCACACAAAGACAAACGCCGTTGGAGTTTCGTTAACTCTTACAGAGAGAAGAACCTCCACCACCACCAAAATCGCCATCAACAAGTACTACACGCTTCTCCTGTTCATCATGATGATCCTCCTCCTCCCATCCAGGTGGCTACTGTTGCCGCCACTTCTAATGCTTCAGCTACCGTGCCATCTCGCAAAGAATGGGCAGCCGTTAAGATTCAGGCGGCATTTCGAGGCTGTTTGGCAAGGAGAGCACTAAGGGCGTTAAAAGGATTGGTGAAGCTGCAGGCATTGGTGAGAGGTCACATTGAGAGGAAGCGCACTGCACAGTGGCTCAAAAGAATGCAGACTCTCTTGCGAGCTCAGGCCCGTGCCCGTGCCACCCGGGCCCAAATTCACCAGGCCTCTTATTTGGGCCCTATCTCCACTCCTCACTTCCATGTTCCAGCAACACCAGAGAAATTTGAAACCCCAATCCGATCTTCCAGCATGAAATATGATCACTCACCTTTAGTACTCAAGAGAAATGGTTCCAAATCCCGTGTCCACACTGGCACTCCAGAACTATATGCAAAAGAAGAACAATTTCGGACTCAACGAAGATCATGGACAAGGGCTTGTAGCATGCATGATGAAAGAAGCGGCAGGATTCTTGAAATTGACTCTGGAAAACCACACAAGAATTCAAGACGCCGAAATCTCTTCGACTCTTCGAGTCAGCCATTGGTTTCAGATCATTACAGGCAGAGTTTCACCAGCACAAGGGACTCAACATCTCATCAATCAGCTCATAATCATTACTCCTGTGAGGCTGGTGAGGTTGAGGAGAGTTCTCTGTGTGGTGCTGCCAATAGTCCTTTTACTCCCACAAAGAGCGATGGCTCGAGAAGCTACCTGAGTAGTGGTGGTTCTGAGTCCTATCCAAGTTACATGGCTTACACTGAATCTTCAAAAGCTAAGGTAAGATCCTTGAGTGCACCGAAACAAAGACTCCAATATGAGAGGTGTGGTTCATTCAATAATTCGAGATTGGCGTGGCAAACGCAAAGGGTGTCATCTACAATGCGTGCAAGCTTCACTAGCAAAGCCTATCCAGGTTCTGGTCATTTGGACAACCTTGGTTATCCCGTCGGGTATAGATACTGA 1203 0.483 MGRATKWFRGLFGLRRSSDSAAPHKDKRRWSFVNSYREKNLHHHQNRHQQVLHASPVHHDDPPPPIQVATVAATSNASATVPSRKEWAAVKIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAQWLKRMQTLLRAQARARATRAQIHQASYLGPISTPHFHVPATPEKFETPIRSSSMKYDHSPLVLKRNGSKSRVHTGTPELYAKEEQFRTQRRSWTRACSMHDERSGRILEIDSGKPHKNSRRRNLFDSSSQPLVSDHYRQSFTSTRDSTSHQSAHNHYSCEAGEVEESSLCGAANSPFTPTKSDGSRSYLSSGGSESYPSYMAYTESSKAKVRSLSAPKQRLQYERCGSFNNSRLAWQTQRVSSTMRASFTSKAYPGSGHLDNLGYPVGYRY 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30229g00033 400 Pfam Protein of unknown function (DUF4005) 298 366 IPR025064 -
Stsc30229g00033 400 PANTHER IQ-DOMAIN 5-RELATED 1 369 - -
Stsc30229g00033 400 Gene3D - 85 127 - -
Stsc30229g00033 400 ProSiteProfiles IQ motif profile. 85 113 IPR000048 GO:0005515
Stsc30229g00033 400 SMART iq_5 107 128 IPR000048 GO:0005515
Stsc30229g00033 400 SMART iq_5 84 106 IPR000048 GO:0005515
Stsc30229g00033 400 Pfam IQ calmodulin-binding motif 87 106 IPR000048 GO:0005515
Stsc30229g00033 400 Pfam IQ calmodulin-binding motif 112 126 IPR000048 GO:0005515
Stsc30229g00033 400 MobiDBLite consensus disorder prediction 234 252 - -
Stsc30229g00033 400 MobiDBLite consensus disorder prediction 304 323 - -
Stsc30229g00033 400 ProSiteProfiles IQ motif profile. 109 136 IPR000048 GO:0005515
Stsc30229g00033 400 MobiDBLite consensus disorder prediction 234 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30229g00033 Stsc-Chr30229 190409 193528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30229g00033 1 65 IQD Protein Family AT4G23060 37.662 4.32e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30229g00033 - - gmx:100814244 328.561