Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30229g00032 ATGTCCACCACACGCTCCCCGACGCGTTCCTCCGAGGACATCGTCGATACCACGCCGTTTCTCGGCAACACTGGCGCCGCCGCCGCTCCCACCGACGATTTCAATTCAGGTCGCCGATTCGTACGGCGGCAGAGCCTCCGACAGGCTGCGAGGTTCCTCCGGCAGGCCAGCGGGAGGAGGATGATGCGAGAGCCGTCGATGGTGGTGCGGGAGACGGCGGCGGAGCAATTGGAGGAGAGACAGAGCGATTGGGCGTATTCGAAGCCTGTGGTGATCCTTGACATGATTTGGAACTTCGCGTTCGTGGTGGTGGCGGCGACGGTGATGGTTCTGAGCAGGAAAGAAGCGCCGAGAATGCCTCTGAGGCTTTGGATTGTAGGGTACGCTATGCAGTGCGTGCTTCACATGGTTTGTGTTTGCGTTGAGTACAGGAGGAGGAGGAGGATCCAGCGCTCGCAGTCTGTGAATGGCAGTGGAGAAGAAAGGGTTGGAAGCAGTGGAAATTTGAGTACACCTTCGAGAGAGGGTTCTTCGCAGTATGTCACATTGGGCCAGGTGGATGAGGACAGCACTAGTGTTGCAAAGCATTTGGAATCAGCAAATACAATGTTTTCTTTTATTTGGTGGATTATTGGGTTCTACTGGGTATCAGCTGGTAGTCAATCTTTAGCAGAAGAATCTCCTCTGCTTTACTGGTTTGTGCTCCCTCAGCCTTCCTTGTTCAGCATGTTTATATATCTACTATCAAATGTTCCATTTACAGTTTCTATTTTTGCAGACCAGGAAGGAGCATCAAAAGAGGATATTGAGCAGCTGTCGAAGTATAAATTTCGAAAAGTTGAAAACAACGAAAAACTTGCTGGAAATACACAAGGACCTGTTGGAGGAATAATGACTGAATGCCGATCTGACTCACCTAGTGAACAGGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCCTATGACGATGGGGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGCTCCTGCATTGATAAATGGCTGTATATTAATGCCACTTGCCCACTCTGCAAGTATAACATCTTGAAAAGTAGCAACCTTGGTCAAGAGGAAGTGTAG 1122 0.4982 MSTTRSPTRSSEDIVDTTPFLGNTGAAAAPTDDFNSGRRFVRRQSLRQAARFLRQASGRRMMREPSMVVRETAAEQLEERQSDWAYSKPVVILDMIWNFAFVVVAATVMVLSRKEAPRMPLRLWIVGYAMQCVLHMVCVCVEYRRRRRIQRSQSVNGSGEERVGSSGNLSTPSREGSSQYVTLGQVDEDSTSVAKHLESANTMFSFIWWIIGFYWVSAGSQSLAEESPLLYWFVLPQPSLFSMFIYLLSNVPFTVSIFADQEGASKEDIEQLSKYKFRKVENNEKLAGNTQGPVGGIMTECRSDSPSEQVLAEEDAECCICLSSYDDGVELRQLPCGHHFHCSCIDKWLYINATCPLCKYNILKSSNLGQEEV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30229g00032 373 Pfam Ring finger domain 317 359 IPR001841 -
Stsc30229g00032 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 371 IPR013083 -
Stsc30229g00032 373 ProSiteProfiles Zinc finger RING-type profile. 318 359 IPR001841 -
Stsc30229g00032 373 SMART ring_2 318 358 IPR001841 -
Stsc30229g00032 373 FunFam E3 ubiquitin-protein ligase At1g12760 304 369 - -
Stsc30229g00032 373 PANTHER TARGET OF ERK KINASE MPK-1 56 364 - -
Stsc30229g00032 373 CDD RING-H2_RNF6-like 317 359 - -
Stsc30229g00032 373 MobiDBLite consensus disorder prediction 1 18 - -
Stsc30229g00032 373 MobiDBLite consensus disorder prediction 1 28 - -
Stsc30229g00032 373 MobiDBLite consensus disorder prediction 154 177 - -
Stsc30229g00032 373 SUPERFAMILY RING/U-box 308 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30229g00032 Stsc-Chr30229 185757 189050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30229g00032 42 366 C3H Transcription Factor Family AT1G68070 42.857 6.29e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30229g00032 - - gmx:100800429 518.079