Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30229g00030 ATGGATGCTACTTGTTTTAACAGTTTGGGGAAGACATTGCAGTCAATTACATTACTATATACCCTAATTTGCCAAGGATTTGATGGGAATCCAATGGTTAGAAAGGCTATCATTGTAACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAGATCAAGAAGTGGATTGGAGAAAGAGTTCTCATAATTTCATATGAGACATTCCGAATTCATTCCTCAAAGTTTAGCTCTAGTGACTCTTGTGATCTCCTTATTTGTGATGAGGCTCACAGACTAAAGAATGATCAGACAATAACAAACCGGGCATTGGCAGCTCTTCCATGTAAACGAAGAATTCTATTATCAGGAACTCCTTTGCAGAATGACTTGGAGGAATTCTTTTCAATGGTTAATTTTACTAATCCTGGAATACTCGGTGACGTTGCCAATTTTCGACGCTACTATGAGGCTCCAATCATCTGCGGAAGAGAACCTAATGCCACTACAGAAGAGAAGAAGCTAGGTGCTGAACGCTCTGCAGAATTAAGTGCCAAAGTAAATCAGTTCATATTAAGAAGAACTAATGCATTATTATCGAATCACTTGCCTCCCAAGATAGTTGAAGTTGTTTGCTGCAAGTTAACTCCCCTACAGTCTGACCTTTACAAACATTTTATACAATCCAAAAATGTTAGACGTGCAATTAATGAAGAACAGAAGCAGTCCAAGATCTTGGCCTACATAACAGCTCTCAAAAAGCTGTGCAATCATCCAAAGCTGATCTATGATACCATAAAAAGTGGAAGTCCCGGAAATTCAGGTTTTGAAGACTGCCTTCGATTCTTCCCGCCACAAATCTTATCTGGAAGGTCTGGCTCACGAACAGGAGGGCATGGAGCTTGGGTTGAATTATCTGGGAAAATGCATGTCTTAGCGAGGTTACTTGCTCATTTGCGTCACAGAACAAGTGATCGCATTGTTTTGGTGTCAAACTACACTCAGACTCTCGATCTTTTTGCGCAATTGTGTCGAGAACAAGGGTATCCTCACCTGAGGCTTGATGGCGCTACATCAATCAAAAAAAGGCAGAAGTTGGTCAACTTCTTTAATGACCCATCCAAAGACGAATTTGTTTTTCTGTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGGCTTGTCTTGTTTGATCCCGACTGGAACCCAGCAAATGATAAACAAGCTGCAGCAAGAATCTGGAGGGATGGACAGAAGAAAAGAGTATATATTTATAGATTTTTGAGTACAGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCGAAAGAAGGATTGCAAAAGGTCATTCAGAAGGAGCAAACTGATGATAGCCTAGGGGCACAGGGTAACTTCCTTTCAACAGAGGATCTTCACAATTTGTTCTCCTTTCAAGAGAATGCCAAGTCAGAGATTCATGAACAGATGTGTTGCACTCGATGTCTAACATGTGATACACCTCAAACCACTGAAAAGGAATATGCAGCCCCTGATGGTGAATCTGATGAAGAAACCTCTGACATAGGTGGATTTGCTAAAATTGCTGGTTGCTTAGAGAAGTTAACAAGGTCAGAAAAGCAGGTGGGGACACCATTGGAAGAAGATTTACGCAGTTGGGGCCATCACTTTTCCCCAGCTTCTGTACCGGATGCCATCCTTCAGGATTCAGCCGGTGATGAGGTGACCTTTGTGTTCACAAATCAAGTTAATGGACGGCTGGTACCTATTGAATCTACAAGTAATTCGGGGGCGCAGCAAAAGGAAGCTAATAAGGAAATACCCAAGTTAAAGCTCCGGTTCAAACAAAAGCCCGCTATTTTCTCTGAGCATAATGATAAATCTTCCTCTCCCAATACCTTGATAAAGGAACGACTTGATTCTATCGGAATTGCCAAAGGCATCTCAACTAATGTAGCAGCATTTAAGACCAATTACCCCATTGTAAATAAATCACCACCACAGAAAAGATCACGTCCTGCAAATGTCAATATACTTGATAATGATGATTTAGTCTGA 2049 0.4134 MDATCFNSLGKTLQSITLLYTLICQGFDGNPMVRKAIIVTPTSLVSNWEAEIKKWIGERVLIISYETFRIHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFSMVNFTNPGILGDVANFRRYYEAPIICGREPNATTEEKKLGAERSAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVRRAINEEQKQSKILAYITALKKLCNHPKLIYDTIKSGSPGNSGFEDCLRFFPPQILSGRSGSRTGGHGAWVELSGKMHVLARLLAHLRHRTSDRIVLVSNYTQTLDLFAQLCREQGYPHLRLDGATSIKKRQKLVNFFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARIWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQKEQTDDSLGAQGNFLSTEDLHNLFSFQENAKSEIHEQMCCTRCLTCDTPQTTEKEYAAPDGESDEETSDIGGFAKIAGCLEKLTRSEKQVGTPLEEDLRSWGHHFSPASVPDAILQDSAGDEVTFVFTNQVNGRLVPIESTSNSGAQQKEANKEIPKLKLRFKQKPAIFSEHNDKSSSPNTLIKERLDSIGIAKGISTNVAAFKTNYPIVNKSPPQKRSRPANVNILDNDDLV 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30229g00030 682 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 9 136 IPR014001 -
Stsc30229g00030 682 Gene3D - 186 497 IPR027417 -
Stsc30229g00030 682 FunFam DNA repair and recombination protein RAD54-like 291 463 - -
Stsc30229g00030 682 CDD DEXHc_RAD54 9 186 - -
Stsc30229g00030 682 Pfam SNF2-related domain 59 254 IPR000330 GO:0005524|GO:0140658
Stsc30229g00030 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 577 IPR027417 -
Stsc30229g00030 682 Gene3D - 7 58 IPR038718 -
Stsc30229g00030 682 Gene3D - 59 185 IPR038718 -
Stsc30229g00030 682 MobiDBLite consensus disorder prediction 660 682 - -
Stsc30229g00030 682 Pfam Helicase conserved C-terminal domain 305 413 IPR001650 -
Stsc30229g00030 682 Gene3D - 208 478 - -
Stsc30229g00030 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 186 IPR027417 -
Stsc30229g00030 682 PANTHER SNF2/RAD54 FAMILY MEMBER 9 603 - -
Stsc30229g00030 682 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 303 461 IPR001650 -
Stsc30229g00030 682 CDD SF2_C_SNF 297 425 - -
Stsc30229g00030 682 FunFam Predicted protein 208 282 - -
Stsc30229g00030 682 SMART helicmild6 330 414 IPR001650 -
Stsc30229g00030 682 SMART ultradead3 5 149 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30229g00030 Stsc-Chr30229 166253 172913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30229g00030 84 455 RAD5 or RAD16-like Gene Family AT1G02670 27.317 2.00e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc30229g00030 SNF2_N 1.1e-36 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30229g00030 K10875 - gmx:100781631 1048.11