Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30229g00023 ATGATGAATGAAAACTCACATCAAGGTTCTGATAATATGAGAGGGAATTCTCTTGTTCAACTATCTGCTTCTCCCCAATATGATTATGAGTCGCAAAGAAATTCTCAACCTGCCTTTCAAAATGTTCAAAATGGATCCTTAGAAACAACTAACTCAATAAGCAGCAATCAAATGCAACTGACTCCTGCACAAAAGAACATGAGTTCAGTGATTGAACACTTGGATCTGCCTACTGCGGATGTTGCGGAAAATTATGGTCCTAACTGTTTGCAAAGAAAGTCTAAAAGGCTGACTCAAATGAGGTTAAAGTCGGAGGACGACGGAACTTCAAAATTACTCAAGGGAAAATATACACTGAGGTCTTCGAGAAGCAGCGACAGAGCTTCGCAGCCGCAGGCTCAAGAGAAATGTAAAGCGCCTGAACTAAGTAGCGATTTGGTTGATGTTAAAAGTGTTGGAGAGAAGAAGAGGAGAGGGAGGAAGAGAAAACAGTGGGGAGAAGAGGGAGTTATTATTGATGAATTTTCGAGAATTAGGGGTCACTTACGATATTTACTGAACCGAGTAAGATATGAGCAAAGCTTGATTGATGCTTATTCTGGCAAGGGCTGGAAAGGTTTCAGCATTGAAAAACTAAAGCCTGAGAAGGAGCTACAACGAGCTAAGTCTGAAATAGTTAAGCGTAAATTGAAAATTAGGGATCTATTTTGGAATCTGGGTTTATTATGCTCTAAAGGAAAGCTTCCAGAGTCTTTGTTTGATTCCGAAGGAGCAATACGCAGTGACGATATTTTCTGTGCAAAATGCGGGTCCAAAGAGCTGACCACTGATAATGATATAATTCTCTGTGATGGTGGTTGTGACCGTGGATTTCACCAATGCTGTTTAAATCCTCCATTGTTAACTAAAGACATTCCTCCTGGCCATGAAATTTGGCTATGCCCGGGATGTAATTGCAAGCTTGAATGCATTAAACTTCTTAATGACTCCTTAGGAACAAGTCTTACTATTAGAGACAGCTGGGAGCGGGTTTTTCCTGAAGCAACATCAGCTGCTGGAATTAATGAGGGCCATAGCCTGAGGCTTCCTTCAGTTGATACCGATGACAACCATTACATAAATCCTAAAGCTCCAGAAGATGAAGAGGTTGAAGGTGGAGAATCAAGCTCTGATGGATCTGATTATGCTTCTGATTCTGAAAAAAAATTGAAAGGTTCGCATTCAGAGGACGACGATTATGATCCAAATGCTCCAGATACTGATAAGGAAGCCTCTGAAGAAAATTCAAGCTCTGGTTTAATTTCTGATGACATTTCTGACGACACTGGGGACGAAGATCAAACTGCTTTCACCACAAGATGA 1362 0.4082 MMNENSHQGSDNMRGNSLVQLSASPQYDYESQRNSQPAFQNVQNGSLETTNSISSNQMQLTPAQKNMSSVIEHLDLPTADVAENYGPNCLQRKSKRLTQMRLKSEDDGTSKLLKGKYTLRSSRSSDRASQPQAQEKCKAPELSSDLVDVKSVGEKKRRGRKRKQWGEEGVIIDEFSRIRGHLRYLLNRVRYEQSLIDAYSGKGWKGFSIEKLKPEKELQRAKSEIVKRKLKIRDLFWNLGLLCSKGKLPESLFDSEGAIRSDDIFCAKCGSKELTTDNDIILCDGGCDRGFHQCCLNPPLLTKDIPPGHEIWLCPGCNCKLECIKLLNDSLGTSLTIRDSWERVFPEATSAAGINEGHSLRLPSVDTDDNHYINPKAPEDEEVEGGESSSDGSDYASDSEKKLKGSHSEDDDYDPNAPDTDKEASEENSSSGLISDDISDDTGDEDQTAFTTR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30229g00023 453 ProSitePatterns Zinc finger PHD-type signature. 266 317 IPR019786 -
Stsc30229g00023 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 322 IPR013083 -
Stsc30229g00023 453 MobiDBLite consensus disorder prediction 96 141 - -
Stsc30229g00023 453 SUPERFAMILY FYVE/PHD zinc finger 258 325 IPR011011 -
Stsc30229g00023 453 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 81 440 - -
Stsc30229g00023 453 MobiDBLite consensus disorder prediction 115 132 - -
Stsc30229g00023 453 Pfam PHD-finger 265 320 IPR019787 -
Stsc30229g00023 453 CDD PHD_PRHA_like 265 317 IPR045876 -
Stsc30229g00023 453 SMART PHD_3 265 318 IPR001965 -
Stsc30229g00023 453 FunFam Homeobox protein HAT3.1 246 324 - -
Stsc30229g00023 453 MobiDBLite consensus disorder prediction 394 426 - -
Stsc30229g00023 453 MobiDBLite consensus disorder prediction 356 453 - -
Stsc30229g00023 453 ProSiteProfiles Zinc finger PHD-type profile. 263 320 IPR019787 -
Stsc30229g00023 453 MobiDBLite consensus disorder prediction 1 38 - -
Stsc30229g00023 453 MobiDBLite consensus disorder prediction 98 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30229g00023 Stsc-Chr30229 123973 126623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30229g00023 128 404 Homeobox Transcription Factor Family AT3G19510 51.203 8.83e-88 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc30229g00023 PHD 2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30229g00023 - - adu:107488674 697.967