Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30229g00008 ATGGAACCAGCAAAGGCAACCATAGCAGCTTCTCAATTCCACCATGATCACCACCACCACCACAACAGCAAGTGCATCAAGATCTTTTGGGGATTGACTATTCTTCTCCTACTGGCTCTATTCAAACAGTCAGCTGCATCAGGTGGCAACATTGTCAAGAGCTTACCAGGCTTCCCCGGAGAGCTACCTTTCCTACTTGAGACAGGGTACATAGGCGTAGGGGAAGTAGATGAGGTTGAGCTATTTTATTACTTCATAGAGTCAGAGGGGGAGCCAGAAGATGATCCACTTGTTCTTTGGCTCACAGGAGGCCCTGGTTGCTCAGCCCTCTATGGTCTCATGTATGAGATTGGTCCTTTAGCTTTCGACTATGGAAGATCCAGTGGGGGAAACAAACCAGTTTTAACATTGAACGATTACTCCTGGACTAAGGTTGCCAACATTATTTTCTTGGATGCTCCTGTTGGTACTGGATTTTCATATGCGGAAGCTTCATATGGATACAACACCAGTGACACAAAATCAGTTGCAGACATTTATATGTTTCTGAGAAAGTGGCTTGTGGCTCACCCTAAGTTTCAAGCAAATCCTCTCTACATTGCTGGTGATTCTTATAGCGGAATCATTGTTCCTGTCCTTGTTAAAGAAATCTCTGATGGTAACAAAGCTGGAACGTTACCACTCATCAATCTCAGAGGTTACATCTTAGGAAACCCATCAACTGATACCGGATATGATTTGAACTCGAGAGTCAAATTTTCCCACAGAGTTGGACTTCTATCCGATGAACTCTATCTGGCACTGGAGCTTTATTGTAAAGGAGAGTATGTTCACCCAAATAAAAGTGAAGGTGGATGCATTAACAGTCTTGAGATAGTGGATATGTGCTTGAAAGACATATATGCTCCCATGATATTGGAGAGGAAGTGTAGCCCGCTCTCATCAGCAAAACCGAACAACATTCTTAAGTGGGTTTCAACCACAAACCTATCATCATCAGATGCACACCTTCTAGAACTTGGAAGGTGCAGGGACTATAACTACTTGTTGGTAAACATCTGGGCTAATGATGAACAAGTTCAAGAAGCTCTGCATGTTAGAAACGGAACTATAAAAACGTGGGAGATGTGTAGCAAAAACTTAGCGTATGTGCATGACATAACAAGTAGTGTTGAATATCACCTCAACTTGACCAGGGAAGACCTTAGATCCATCATTTACAGCGGAGATCATGATCTGCTTGTTCCATATGTGGGCACTGAGGAATGGATACAATCTCTGAATTTGACTGTTTCTTCTGATGAAGTGTGGAGCCCATGGTTTCTTGATGGACAAGTTGCAGGTTACACGGAGATATACACAAAGAATAACTACGTGATGACATTTGCTACTGTGAAGGCAAGAAAATAG 1410 0.4277 MEPAKATIAASQFHHDHHHHHNSKCIKIFWGLTILLLLALFKQSAASGGNIVKSLPGFPGELPFLLETGYIGVGEVDEVELFYYFIESEGEPEDDPLVLWLTGGPGCSALYGLMYEIGPLAFDYGRSSGGNKPVLTLNDYSWTKVANIIFLDAPVGTGFSYAEASYGYNTSDTKSVADIYMFLRKWLVAHPKFQANPLYIAGDSYSGIIVPVLVKEISDGNKAGTLPLINLRGYILGNPSTDTGYDLNSRVKFSHRVGLLSDELYLALELYCKGEYVHPNKSEGGCINSLEIVDMCLKDIYAPMILERKCSPLSSAKPNNILKWVSTTNLSSSDAHLLELGRCRDYNYLLVNIWANDEQVQEALHVRNGTIKTWEMCSKNLAYVHDITSSVEYHLNLTREDLRSIIYSGDHDLLVPYVGTEEWIQSLNLTVSSDEVWSPWFLDGQVAGYTEIYTKNNYVMTFATVKARK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30229g00008 469 Gene3D alpha/beta hydrolase 61 467 IPR029058 -
Stsc30229g00008 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 186 211 IPR001563 GO:0004185|GO:0006508
Stsc30229g00008 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 161 IPR001563 GO:0004185|GO:0006508
Stsc30229g00008 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 150 IPR001563 GO:0004185|GO:0006508
Stsc30229g00008 469 Pfam Serine carboxypeptidase 56 466 IPR001563 GO:0004185|GO:0006508
Stsc30229g00008 469 FunFam Serine carboxypeptidase-like 19 45 316 - -
Stsc30229g00008 469 SUPERFAMILY alpha/beta-Hydrolases 52 466 IPR029058 -
Stsc30229g00008 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 52 467 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30229g00008 Stsc-Chr30229 68436 71191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30229g00008 350 467 Calmodulin-binding Proteins AT2G22960 47.458 1.01e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30229g00008 K16296 - cave:132177555 525.783