Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30229g00001 ATGCCTGAGAGAAGCGAGAAAGAGAAGACAGTGAGCGTGAGTGGGGCACCTCGAAATGAGAGCCCAATACTCGACCGTCTGCTAGTTCTCTTTGCTAGAATAAATTGGGGGTTGTACCTGCAAGACATTTCAATGTCTAAGTCAGTGAGAGTTTTAGATAAATTGCAGGTAATAGGAAATGGGTTAATTAGAAGCAGGGGCACGAAGGATATGGCTTCAAATAATAATTCAATCTCGAATTCGAAGAAGAACAAGGGTCGCCAAAAGATCGAGATGAAGAAGATGACGAAGGAGAGCAACTTGCAAGTGACGTTCTCCAAGCGTCGAGGTGGGCTTTTCAAGAAAGCCAGCGAGCTAAGCACCCTTTGCGGTGTTGACGTGGCACTCATCGTGTTCTCCCCCGGGAACAAGGCCTATTCTTTTGGCCACCCAAGCGTGGAATCCCTAATCCAGAGCTTCATCGAAGGTGGGGGCCCGCCACACTTGGACTCCGCCGCCGTGCATCATCACTTCACGGAGGAGCACGACGACCTCAACACATTGCTGACGAAGATCAATGCGGAGATCGAAGAGGAGAGAAAGCTGATGGAGGAGATGAACTGCATGCGGAAGGAGGCAGAGGGTAAGTGGTGGTGGGCTGCTCCACTCGACGAGATGAATATGCCAAAACTAAATGAATATAAGGCGGCGCTGGAGGAGCTGAAGAAGAGCGTTACTTGTCACTTCGAGAAGCTTCGTGGTAAAGACAACGGCGACCCTGCTACTGTGGTGGCCGCCGCCGTCATGGCTTCTTCTAATAATAACATGGTCCCGGTGCCTGTGCCTGTGCCGGTGCACGTGCCGCTGCCAATGCCGTTGCCGCCAATATTTTTCTCGTCGCTGTTTCAAAACTCTCATCATCATCAAATGCATAATAATAATAACAATAATAATAATAATAATGATCAAAGATATGAAGATGAGAGTTCGTACCAGTTTTATAGCTACACTGCCATGATGCAGGGAGGAGGATCACCATTTGGACCATACACTACTGCTCGTAACAACAGCGGCTTCTGA 1059 0.4873 MPERSEKEKTVSVSGAPRNESPILDRLLVLFARINWGLYLQDISMSKSVRVLDKLQVIGNGLIRSRGTKDMASNNNSISNSKKNKGRQKIEMKKMTKESNLQVTFSKRRGGLFKKASELSTLCGVDVALIVFSPGNKAYSFGHPSVESLIQSFIEGGGPPHLDSAAVHHHFTEEHDDLNTLLTKINAEIEEERKLMEEMNCMRKEAEGKWWWAAPLDEMNMPKLNEYKAALEELKKSVTCHFEKLRGKDNGDPATVVAAAVMASSNNNMVPVPVPVPVHVPLPMPLPPIFFSSLFQNSHHHQMHNNNNNNNNNNDQRYEDESSYQFYSYTAMMQGGGSPFGPYTTARNNSGF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30229g00001 352 PANTHER MADS BOX PROTEIN 87 239 - -
Stsc30229g00001 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 94 141 IPR002100 GO:0003677|GO:0046983
Stsc30229g00001 352 Gene3D - 98 157 IPR036879 GO:0003677|GO:0046983
Stsc30229g00001 352 CDD MADS_MEF2_like 86 150 IPR033896 GO:0000977|GO:0045944
Stsc30229g00001 352 ProSiteProfiles MADS-box domain profile. 85 145 IPR002100 GO:0003677|GO:0046983
Stsc30229g00001 352 MobiDBLite consensus disorder prediction 66 88 - -
Stsc30229g00001 352 PRINTS MADS domain signature 87 107 IPR002100 GO:0003677|GO:0046983
Stsc30229g00001 352 PRINTS MADS domain signature 122 143 IPR002100 GO:0003677|GO:0046983
Stsc30229g00001 352 PRINTS MADS domain signature 107 122 IPR002100 GO:0003677|GO:0046983
Stsc30229g00001 352 FunFam Agamous-like MADS-box protein AGL62 97 162 - -
Stsc30229g00001 352 SUPERFAMILY SRF-like 86 165 IPR036879 GO:0003677|GO:0046983
Stsc30229g00001 352 MobiDBLite consensus disorder prediction 67 83 - -
Stsc30229g00001 352 SMART madsneu2 85 144 IPR002100 GO:0003677|GO:0046983
Stsc30229g00001 352 Gene3D - 163 261 - -
Stsc30229g00001 352 Coils Coil 175 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30229g00001 Stsc-Chr30229 4814 9119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30229g00001 82 267 Type I MADS-box Gene Family AT5G60440 46.316 2.60e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc30229g00001 SRF-TF 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30229g00001 - - adu:107488602 312.768