Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30228g00026 ATGGCTCGTTCTCTTCCTTTGGTTTCCACCATTTTTGTCCTTCTTTTGCTTCTGGTGGCCACCGAGATGGGGCCAACAATGGTAGCTGAAGCCAGAACTTGTGAGTCTCAAAGCCATCGCTTCAAAGGACCGTGTGTGAGCGACACGAACTGCGCCTCCGTTTGCAAAACGGAGCGCTTCCCTTCTGGGCATTGCCGCGGCTTCCGTCGCCGATGCTTCTGCAAGAAGCCTTGTGCTTGA 240 0.5417 MARSLPLVSTIFVLLLLLVATEMGPTMVAEARTCESQSHRFKGPCVSDTNCASVCKTERFPSGHCRGFRRRCFCKKPCA 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30228g00026 79 SMART gth_4 33 78 IPR003614 GO:0006952
Stsc30228g00026 79 CDD Knot1 43 74 IPR003614 GO:0006952
Stsc30228g00026 79 PANTHER DEFENSIN-LIKE PROTEIN 1 8 75 - -
Stsc30228g00026 79 Gene3D - 32 78 IPR036574 -
Stsc30228g00026 79 SUPERFAMILY Scorpion toxin-like 32 78 IPR036574 -
Stsc30228g00026 79 Pfam Gamma-thionin family 32 78 - -
Stsc30228g00026 79 PRINTS Purothionin signature 33 48 IPR008176 GO:0006952
Stsc30228g00026 79 PRINTS Purothionin signature 63 77 IPR008176 GO:0006952
Stsc30228g00026 79 ProSitePatterns Gamma-thionins family signature. 32 55 IPR008176 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30228g00026 Stsc-Chr30228 230392 231234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30228g00026 1 78 Plant Defensins Gene Families AT2G02100 60.256 1.25e-30 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30228g00026 - - gmx:100798577 113.62