Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30228g00018 ATGGAGAAACTGAAATTACCTGTTAAGTATGATCCTGATTTTGCTGGAAGTGACCAGCCAGATTCATTTCCAATATTTAAACTTCCTGTGAGTGAAGATCTTAGAAGAGACGAGCATGGTGTCGGTTCTGGACCGGCGATCGCATCTTCTAATTCTTCAGGCAATAGAGAACCTGTCAACAAGAAGTGGATGGCATTTTCCAGAGATTCTGGTTTCAACAATGATGGAAACTCTGCAATGAATAATCATCAAACTTTAACTGAAGAAACCATAGCTGAGAGAACTGCTGAATGGGGTATTCCAATGAACTCAAGTAGTGTAAAGGCAATAGCAGAGAAAACAAGCTCCTCTTCTGATGGTGAAAGAACCAAAAACTTATCAGGTAGATTTGTTGAATCAACAAGGACATCCGGGGACTCGAACTATGGATCCGAATCAGGGGTGTTCCCAAGGGTCTCACAAGAGTTGAAAGAAGCCTTAGCGACGCTGCAACAAACTTTTGTTGTCTCGGATGCAACCAAGCCTGACTGTCCTATCATGTATGCCAGCAGTGGCTTTTTCAATATGACTGGTTATGCTTCAAAGGATGTTATTGGAAGGAATTGTCGATTTCTTCAGGGGCCTGATACAGACATGAATGAAGTGGCGAAAATTCGGGATGCAGCTAGAAATGGGAAAAGTTATTGTGGAAGGCTTTTAAACTACAAGAAAGATGGAACTCCCTTCTGGAATCTTCTCACAATTACCCCCATCAAAGATGACAATGGCAACACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGATTGAGCGAAAAGGTGTTACGACCAAATGGATTGCCTACATCGTTGATTCGTTATGATGCTCGTCAGAAGGAGAGAGCTTTAGGTTCCATCACTGAGGTTGTCCAAACTGTGAAGGACCCAAAATCCTCTAGTAGGCCAATGATTGAAGAAAATGCTACCAAGCTTGAAGAGCAAGAGAAGCTTGATTTTGATTTTGCTTTGCCAAAGTCTGTTGAAGCTGGGAATACAAGTAAATTTATCAAACAAACTCCTCCCAAGAACTCTGAAACTGATGTATCACGCTTGAGTTCTTATGAGGAGAGGAGCAAGGTTTCAAGAAAATCGTCACGGGCTTCTTTCAAGGGTTTTAAAGTGAGAACAAGTTCTACAGGGAGAGATGAGGATACACCCATCATTGAACCAGAGGTATTGATGACCAAGGAAGTAACGCGGACCGAAAGCTGGGAGCGTGCTGTAAGAGAGAGGGATATAAGGCAGGGAATAGATCTAGCAACAACATTGGAGAGGATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATTGCCCTATTATATTTGCATCTGATAGTTTCCTTGAACTTACCGAATATACCCGAGAAGAAATTTTGGGAAGAAATTGCCGGTTTCTTCAAGGACCAGAAACAGATCAAGCAACAGTTCAAAGGATTAGAGATGCCATCAGAGAGCAGAGGGAAATTACTGTTCAGTTGATCAATTATACTAAGAGTGGAAAGAAGTTCTGGAATTTATTTCATTTGCAACCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTAGATGGAAGTGACCATGTTGAACCCTTAAAAAATCGGCTGTCTGAGAATGCTGAGCTACAAAGTGCTAAGTTGGTAAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAGCTTCCTGATCCCAACTTGAGGCCAGAAGATTTATGGGCAATTCATTCTCAACCGGTCTTTCCACTACCTCACAAGAAGGATAACCCTTCTTGGGTAGCAATAAAAAAGATAGCAGCAAGAGGTGAAAAAATTGGCCTGCATCATTTTTCGCCTATTAGGCCGTTGGGTTGTGGAGACACTGGCAGTGTTCATCTCGTGGAACTCCAAGATACCGACGAACTATATGCAATGAAGGCAATGGAAAAGTCTATAATGTTAAACCGTAACAAGGTTCACCGAGCATGCATCGAGAGAGAGATTATATCATTGCTAGATCATCCTTTTCTTCCTACGTTGTACACTTCATTTGAGACTTCCACACATGTGTGTTTGATTACTGACTTCTGCGCCGGGGGAGAGTTATTTGCATTGCTCGACAAGCAACCTATGAAGATTTTCAAGGAGGAGTCAGCAAGATTTTATGCAGCAGAGGTTGTGATTGGTTTGGAATATCTGCACTGTTTAGGTATAATTTATCGAGATTTAAAGCCCGAAAATATATTACTTAACAAGGAAGGCCATGTTGTATTGACTGACTTTGATCTATCATTTATGACAAATTGTAAACCCCAGGTTCTTAAGCATCCGCCACCTAGCAGTAGAAGAAGATCGCGAAGTCAACCACCTCCGACATTTGTTGCAGAGCCAGTTACACAGTCAAATTCATTTGTTGGAACTGAAGAATACATAGCTCCTGAAATCATTACTGGAGCTGGGCATAGTAGTGCCATTGATTGGTGGACCCTTGGAATCTTGCTGTATGAGATGCTCTATGGTCGTACACCGTTTCGAGGAAAGAATAGACAGAGGACATTTTCCAACATCTTGCACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCAAGCCTTGCAGCAAGGCAGTTAATCAATGCACTACTTCAAAGAGATCCGGCCAGTCGTCTAGGCTCGGCCACCGGTGCCAATGAGATCAAACAACATCCATTCTTCCGCGGAATCAATTGGCCTTTAATTCGCAACATGAACCCACCTCCATTAGAGGCTCCTCTAAAATTGATAGAAAAGGTTCCAGTGGCCAAGGATGTAAAGTGGGAAGATGATGGTGTTCTTTCTACCTCAATTGACATGGATAATATTTTCTGA 2916 0.4215 MEKLKLPVKYDPDFAGSDQPDSFPIFKLPVSEDLRRDEHGVGSGPAIASSNSSGNREPVNKKWMAFSRDSGFNNDGNSAMNNHQTLTEETIAERTAEWGIPMNSSSVKAIAEKTSSSSDGERTKNLSGRFVESTRTSGDSNYGSESGVFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFNMTGYASKDVIGRNCRFLQGPDTDMNEVAKIRDAARNGKSYCGRLLNYKKDGTPFWNLLTITPIKDDNGNTIKFIGMQVEVSKYTEGLSEKVLRPNGLPTSLIRYDARQKERALGSITEVVQTVKDPKSSSRPMIEENATKLEEQEKLDFDFALPKSVEAGNTSKFIKQTPPKNSETDVSRLSSYEERSKVSRKSSRASFKGFKVRTSSTGRDEDTPIIEPEVLMTKEVTRTESWERAVRERDIRQGIDLATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVQRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSENAELQSAKLVKATAENVDEAVRELPDPNLRPEDLWAIHSQPVFPLPHKKDNPSWVAIKKIAARGEKIGLHHFSPIRPLGCGDTGSVHLVELQDTDELYAMKAMEKSIMLNRNKVHRACIEREIISLLDHPFLPTLYTSFETSTHVCLITDFCAGGELFALLDKQPMKIFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLNKEGHVVLTDFDLSFMTNCKPQVLKHPPPSSRRRSRSQPPPTFVAEPVTQSNSFVGTEEYIAPEIITGAGHSSAIDWWTLGILLYEMLYGRTPFRGKNRQRTFSNILHKDLTFPSSIPASLAARQLINALLQRDPASRLGSATGANEIKQHPFFRGINWPLIRNMNPPPLEAPLKLIEKVPVAKDVKWEDDGVLSTSIDMDNIF 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30228g00018 971 CDD PAS 179 268 IPR000014 -
Stsc30228g00018 971 Gene3D Phosphorylase Kinase; domain 1 633 717 - -
Stsc30228g00018 971 CDD STKc_phototropin_like 632 945 - -
Stsc30228g00018 971 MobiDBLite consensus disorder prediction 1 58 - -
Stsc30228g00018 971 SMART pac_2 229 271 IPR001610 -
Stsc30228g00018 971 SMART pac_2 510 552 IPR001610 -
Stsc30228g00018 971 SUPERFAMILY Protein kinase-like (PK-like) 613 946 IPR011009 -
Stsc30228g00018 971 MobiDBLite consensus disorder prediction 352 377 - -
Stsc30228g00018 971 ProSiteProfiles PAC domain profile. 507 561 IPR000700 -
Stsc30228g00018 971 FunFam Putative LOV domain-containing protein 718 933 - -
Stsc30228g00018 971 Gene3D Transferase(Phosphotransferase) domain 1 718 936 - -
Stsc30228g00018 971 ProSiteProfiles Protein kinase domain profile. 634 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30228g00018 971 ProSiteProfiles PAS repeat profile. 152 225 IPR000014 -
Stsc30228g00018 971 Pfam PAS domain 456 548 IPR000014 -
Stsc30228g00018 971 Pfam PAS domain 173 269 IPR000014 -
Stsc30228g00018 971 ProSiteProfiles PAS repeat profile. 433 506 IPR000014 -
Stsc30228g00018 971 SMART pas_2 154 223 IPR000014 -
Stsc30228g00018 971 SMART pas_2 435 504 IPR000014 -
Stsc30228g00018 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
Stsc30228g00018 971 MobiDBLite consensus disorder prediction 352 366 - -
Stsc30228g00018 971 FunFam Putative LOV domain-containing protein 166 322 - -
Stsc30228g00018 971 PANTHER FLIPPASE KINASE 1-RELATED 129 939 - -
Stsc30228g00018 971 FunFam LOV domain-containing protein 633 717 - -
Stsc30228g00018 971 CDD PAS 460 548 IPR000014 -
Stsc30228g00018 971 SMART serkin_6 634 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30228g00018 971 ProSiteProfiles PAC domain profile. 226 280 IPR000700 -
Stsc30228g00018 971 Coils Coil 557 577 - -
Stsc30228g00018 971 NCBIfam PAS domain S-box protein 460 550 IPR000014 -
Stsc30228g00018 971 NCBIfam PAS domain S-box protein 178 269 IPR000014 -
Stsc30228g00018 971 SUPERFAMILY PYP-like sensor domain (PAS domain) 452 548 IPR035965 -
Stsc30228g00018 971 SUPERFAMILY PYP-like sensor domain (PAS domain) 173 265 IPR035965 -
Stsc30228g00018 971 ProSitePatterns Protein kinases ATP-binding region signature. 640 663 IPR017441 GO:0005524
Stsc30228g00018 971 MobiDBLite consensus disorder prediction 789 814 - -
Stsc30228g00018 971 Gene3D PAS domain 422 586 - -
Stsc30228g00018 971 Gene3D PAS domain 166 334 - -
Stsc30228g00018 971 FunFam LOV domain-containing protein 422 586 - -
Stsc30228g00018 971 Pfam Protein kinase domain 637 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30228g00018 Stsc-Chr30228 123008 131266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30228g00018 54 968 AGC Kinase Gene Family AT5G58140 71.569 0.0 1303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc30228g00018 Pkinase 4.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30228g00018 K20715 - gmx:100820096 1509.58