Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30228g00012 ATGAAAACTACCCCTATGATGATACTAGTACTAGGAATAGTTTCAGCTACATTTCTTGTGATTATTGCACTTTATGTGTTGTTATACTTGAGAAGATTATCATCAAGGGATGGTAGTGAGAGGAAGAAGGATGTAGAGAGGTCAGAGCAAGAGAGAAAGGAGGAAGAAGAAGAAGAAGGAGATGAGATGGTGGCTATGAAGGAGGACTTGATGATCTTCCATGGTGGTGAGGATTTGACAATCTGTGACATTTTGGATGCACCTGGTGAGGTTATTGGCAAGTCCAATTATGGAACTTTGTATAAGGCTTTGCTTCAGAGGAGCAACAAGGTGAGGCTTTTGAGGTTTCTGAGGCCAGTTTGTATCACCACAAGAGGTGAAGATTTTGATGAGATGATTCAGTTTCTTGGGAGGTTGAGGCACCCTAATTTGGTGCCTCTTCTTGGATTCTACACAGGTCCAAGGGGTGAGAAGCTACTTGTTCATCCTTTCTATAGGAATGGAAATCTCTCTCAATTCATTAGAGATGGAAATGGAGAGTGTTACAAATGGTCTAACATATGCAAAATATCCTATGGCATAGCCAAAGGATTAGAGCATCTTCACACTGGACTAGACAAACCAATCATCCATGGAAACCTCAAGTCGAAAAACATCCTTTTGGACCGGTCTTACCAGCCGTACATCTCGGATTCCAGCCTCCATCTTCTGCTGAATCCTACCGCCGGCCAAGAAATACTCGAAAGCTCGGCTGCTCAGGGCTATAAGGCACCAGAGCTCATCAAGATGAAGCATGCAAGCGAAGAGACTGACATATACAGCCTCGGTGTGATCTTCCTCGAATTGCTTTCGGGAAAGGAACCTATCAATGAGCATCCTACACCTGATGAGGATTTCTATCTTCCCAATTTCATGAGGAATGCTGTTCTTGCACATAGAACTTGTGATCTTTACCATCCAGCCATTCTCCTCAGAAACAGCAGAGATGATCACAACAAGAATTCGTCGGTCAGCGAAGAAAGCATTCTCAAGTTCTTCCAACTTGCAATGGCTTGTTGCTCCCCTTCACCTTCAGTTAGGCCTAACATAAAGCTAGTCCTTAGAAAGCTTGAAGAGATTATACACTAG 1128 0.4326 MKTTPMMILVLGIVSATFLVIIALYVLLYLRRLSSRDGSERKKDVERSEQERKEEEEEEGDEMVAMKEDLMIFHGGEDLTICDILDAPGEVIGKSNYGTLYKALLQRSNKVRLLRFLRPVCITTRGEDFDEMIQFLGRLRHPNLVPLLGFYTGPRGEKLLVHPFYRNGNLSQFIRDGNGECYKWSNICKISYGIAKGLEHLHTGLDKPIIHGNLKSKNILLDRSYQPYISDSSLHLLLNPTAGQEILESSAAQGYKAPELIKMKHASEETDIYSLGVIFLELLSGKEPINEHPTPDEDFYLPNFMRNAVLAHRTCDLYHPAILLRNSRDDHNKNSSVSEESILKFFQLAMACCSPSPSVRPNIKLVLRKLEEIIH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30228g00012 375 SUPERFAMILY Protein kinase-like (PK-like) 89 371 IPR011009 -
Stsc30228g00012 375 Gene3D Phosphorylase Kinase; domain 1 81 164 - -
Stsc30228g00012 375 Pfam Protein tyrosine and serine/threonine kinase 89 294 IPR001245 GO:0004672|GO:0006468
Stsc30228g00012 375 Gene3D Transferase(Phosphotransferase) domain 1 165 375 - -
Stsc30228g00012 375 ProSiteProfiles Protein kinase domain profile. 86 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30228g00012 375 MobiDBLite consensus disorder prediction 40 61 - -
Stsc30228g00012 375 Coils Coil 38 59 - -
Stsc30228g00012 375 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 2 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30228g00012 Stsc-Chr30228 73128 75419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30228g00012 32 373 Carbohydrate Esterase AT5G61570 58.261 1.82e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc30228g00012 PK_Tyr_Ser-Thr 9.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30228g00012 - - adu:107476750 639.802