Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30228g00011 ATGGAGGAACATGAAAATGACACTGCCGGTAATGTAACCGAGGAAGAGCCCGCCATCGGGCCCGGCCCAGCCCCTCGAGCCCGTCCTAAGCGTCCCCTCCAGTTCGAGCAGGCTTACCTTGACGCCCTTCCCTCCGCTAACATGTACGAGAAAAGTTATATGCACCGCGATGTGGTCACGCATGTTGCTGTTTCAGCTGCCGAATTCTTCATAACTGGAAGTATTGATGGGCACCTGAAATTTTGGAAGAAAAGGCCCATTGGTATTGAGTTTGCCAAACACTTCAGATCTCATCTCGGTCCGATCGAAGGCCTAGCCGTTAGTATTGATGGTCTGCTATGTTGTACGATATCACATGACCGTTCTGTCAAAGTATATGACGTAGTAAACTATGACATGATGGTAATGATTCGTTTGCCATATGTTCCTGGTGCTGTGGAATGGGTTTACAAACAAGGAGATGTCAAAGCTAGACTTGCCATTAGTGATAGGAACTCATCCTTTGTGCACATATATGATGCTCGATCAGGTTCAAATGACCCTATCATCTCCAAAGAGATTCATATGGCTCCTATTAAAGTTATGAGGTACAATCCCATATATGATTCTGTAATTTCTGCCGATACGAAGGGGATCATTGAGTACTGGAGCCCCACCACGCTTCAATTCCCAGAAGATGAGGTCAATTTTAAACTGAAGAGTGATACTAACCTCTTTGAAATAGTAAAATGCAAGACTTCTGTTTCGGCTATTGAGGTCAGCCCAGATGGAAAACAATTTTCTATCACGTCGCCTGACCGCAGGATACGTGTCTTTTGGTTCAGAACGGGTAAACTAAGAAGAGTTTATGATGAATCTTTGGAGGTTGCTCAAGATCTTCAAAGAAGTGATGCTCCATTATACCGGCTGGAAGCCATTGATTTTGGCCGAAGGATGGCTGTAGAGAAGGAGATAGAGAAGACAGAAAGTGCTCCCTCGCCCAATGCAGTTTTTGATGAAAGTTCTAATTTTATTATTTATGCAACCTTGCTTGGGATTAAAGTTATTAATTTGCACACCAACAAAGTTGCTCGAATACTTGGAAAGGTGGAGAACAATGATAGGTTCTTAAGGATTGCTTTATATCAAGGTGATCAAAGTAGTAAAAAAGTAAGAAAGATCCCTTCGGCCGCTGCTAATGCCAATGAAAGCAAAGAGCCTTTGACAGACCCCACTCTCCTGTGTTGTGCTTTCAAAAAGCACAGAATATATTTATTCAGTCGGAGAGAACCAGAAGAGCCTGAAGATGCAACCAAGGGAAGAGACGTGTTCAATGAAAAGCCTCCTGCTGATGAGCTTTTGGCAGTTTCAGATGTTGGAAAAACTGCAACAACCTCACTTCCCGACAATGTGATTCTACACACCACCATGGGTGATATTCATATGAAATTATACCCAGAGGAATGTCCAAAAACTGTGGAGAACTTTACAACTCACTGCCGGAATGGTTATTATGACAATCTTATTTTTCATCGAGTCATCAAGGGCTTCATGATACAAACGGGAGATCCTTTAGGAGATGGCACTGGTGGGCAGTCCATTTGGGGGAGGGAATTTGAGGATGAATTTCACAAAAGTCTAAGGCATGATAGGCCTTTCACAGTGTCAATGGCAAATGCTGGCCCGAATACGAACGGCTCCCAGTTCTTTATCACTACAGTAGCCACTCCTTGGTTGGACAACAAGCATTCTGTATTTGGTAGAGTTGTGAAGGGAATGGATGTTGTTCAGGGTATAGAAAAAGTGAAGACAGACAAGACAGATAAGCCATACCAAGATGTTAAAATCCTAAATGTCACCGTACCGAAGTCCTAA 1854 0.4337 MEEHENDTAGNVTEEEPAIGPGPAPRARPKRPLQFEQAYLDALPSANMYEKSYMHRDVVTHVAVSAAEFFITGSIDGHLKFWKKRPIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISHDRSVKVYDVVNYDMMVMIRLPYVPGAVEWVYKQGDVKARLAISDRNSSFVHIYDARSGSNDPIISKEIHMAPIKVMRYNPIYDSVISADTKGIIEYWSPTTLQFPEDEVNFKLKSDTNLFEIVKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPSPNAVFDESSNFIIYATLLGIKVINLHTNKVARILGKVENNDRFLRIALYQGDQSSKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDVGKTATTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHSVFGRVVKGMDVVQGIEKVKTDKTDKPYQDVKILNVTVPKS 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30228g00011 617 Gene3D - 444 615 IPR029000 -
Stsc30228g00011 617 SUPERFAMILY Cyclophilin-like 461 614 IPR029000 -
Stsc30228g00011 617 CDD cyclophilin_WD40 465 612 - -
Stsc30228g00011 617 Pfam WD domain, G-beta repeat 93 127 IPR001680 GO:0005515
Stsc30228g00011 617 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 460 614 IPR002130 GO:0000413|GO:0003755
Stsc30228g00011 617 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 464 614 IPR002130 GO:0000413|GO:0003755
Stsc30228g00011 617 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 498 515 IPR020892 GO:0003755|GO:0006457
Stsc30228g00011 617 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 459 613 IPR044666 -
Stsc30228g00011 617 FunFam Peptidylprolyl isomerase domain and WD-repeat protein 1 49 312 - -
Stsc30228g00011 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 574 589 IPR002130 GO:0000413|GO:0003755
Stsc30228g00011 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 561 573 IPR002130 GO:0000413|GO:0003755
Stsc30228g00011 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 477 492 IPR002130 GO:0000413|GO:0003755
Stsc30228g00011 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 503 515 IPR002130 GO:0000413|GO:0003755
Stsc30228g00011 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 546 561 IPR002130 GO:0000413|GO:0003755
Stsc30228g00011 617 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 445 615 - -
Stsc30228g00011 617 SMART WD40_4 234 273 IPR001680 GO:0005515
Stsc30228g00011 617 SMART WD40_4 178 217 IPR001680 GO:0005515
Stsc30228g00011 617 SMART WD40_4 46 83 IPR001680 GO:0005515
Stsc30228g00011 617 SMART WD40_4 88 127 IPR001680 GO:0005515
Stsc30228g00011 617 SUPERFAMILY WD40 repeat-like 57 280 IPR036322 GO:0005515
Stsc30228g00011 617 MobiDBLite consensus disorder prediction 1 30 - -
Stsc30228g00011 617 Gene3D - 43 439 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30228g00011 Stsc-Chr30228 60802 65583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30228g00011 464 614 U-box Gene Family AT5G67530 46.358 6.12e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30228g00011 K12736 - gmx:100792207 1154.04