Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30228g00010 ATGAAGATCATTGCTGCGTATTTGTTGGCCGTATTGGGAGGCAACACTTCCCCTTCAGCTGATGATATCAAGAACATCCTTTCCTCAGTTGGAGCTGAGTGTGATGATGACAAGCTTGAATTGCTCATGAGTCAAGTGGCGGGCAAAGATGTCACTGAGCTAATTGCATGTGGAAGGGAGAAGTTGGCTTCAGTGCCTTCTGGTGGTGGTGGTGCAGTTGCTGTTGCCGCTGCACCCGCTGCTGGAGGTGGAGGTGCCGCACCTGCTGCAGAAGCAAAGGAGGAAAAGAAAGTGGAAGAGAAGGAAGAGTCAGATGATGATATGGGTTTCAGCTTATTCGACTAG 345 0.4986 MKIIAAYLLAVLGGNTSPSADDIKNILSSVGAECDDDKLELLMSQVAGKDVTELIACGREKLASVPSGGGGAVAVAAAPAAGGGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30228g00010 114 Gene3D - 1 58 IPR038716 -
Stsc30228g00010 114 MobiDBLite consensus disorder prediction 80 114 - -
Stsc30228g00010 114 Hamap 50S ribosomal protein L12 [rpl12]. 2 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
Stsc30228g00010 114 FunFam 60S acidic ribosomal protein P2 1 59 - -
Stsc30228g00010 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Stsc30228g00010 114 CDD Ribosomal_P2 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Stsc30228g00010 114 Pfam 60s Acidic ribosomal protein 17 113 - -
Stsc30228g00010 114 MobiDBLite consensus disorder prediction 90 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30228g00010 Stsc-Chr30228 56691 58191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30228g00010 1 114 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 62.281 4.95e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30228g00010 K02943 - rcu:8258893 131.339