Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30228g00005 ATGGGCGCGTGCTTCTCCGCATCTAAAGTCGTTAGCGGATCCAATACGACGTCGCATCACAACAAACACAAACAGCAGCAGCAGCACCGGCATCAGCAGCAGAGGTCAACGAACAAGCACGTGCCGTGCGGCAAGCGAACCGATTTCGGTTACGATAAAGACTTCGATGACCGTTACTCGCTTGGAAAGTTGTTAGGTCATGGCCAATTCGGTTACACCTATGTCGGAATTCACAAGGCCGATGGACACCGCGTCGCCGTTAAGAGGCTCGATAAGGCAAAGATGGTTCTTCCTATAGCGGTGGAGGATGTTAAGCGAGAGGTCAAGATACTGAAAGCGCTTGCTGGCCACGAGAATGTGGTTCAGTTCTACAATGCTTTTGAAGATGATTCCTATGTGTACATAGTTATGGAGTTGTGCGAGGGTGGAGAACTGCTAGATCGAATATTGGCCAAGAAGAACAGTCGGTATAGTGAAAAAGATGCTGCAGTGGTTGTTAGGCAGATGCTCAAGGTTGCTGCTGAGTGTCATTTACATGGTTTGGTACACCGCGACATGAAACCAGAGAACTTCCTTTTCAAATCAACCAAAGAAAATTCACCTTTAAAGGCTACAGATTTTGGTTTGTCAGATTTCATAAAACCTGGAAAAAAATTTCATGATATAGTTGGCAGTGCTTACTATGTTGCGCCTGAAGTGCTAAAACGCAAGTCAGGCCCTGAATCTGATGTGTGGAGCATAGGTGTTATTACATACATATTACTGTGTGGGAAACGTCCATTTTGGGATAAGACTGAGGATGGTATTTTCAAGGAGGTCTTACGCAACAAGCCTGATTTCCGCAGGAAACCATGGCCAACTATAAGCAATGCAGCAAAGGATTTTGTGAAGAAATTGTTGGTAAAGGATCCTAGGGCAAGATTAACTGCTGCTCAGGCTTTGTCACATCCATGGGTTAGAGAAGGAGGAGAAGCATCAGAGATTCCTATCGATATATCTGTTCTGAGCAACATGCGGCAGTTTGTGAAGTATAGTCGATTGAAACAATTTGCACTGAGGGCATTGGCTAGTACGCTTAATGAAGAAGAGTTGGCTGATCTAAGAGATCAATTTGATGCAATCGATGTGGACAAAAATGGTTCAATTAGTCTGGAAGAGATGAGACAGGCTCTTGCTAAAGATCTACCTTGGAAGTTGAAAGAATCACGCGTTCTAGAGATATTGCAAGCGATAGATAGCAACACAGATGGGTTAGTGGATTTCACTGAATTTGTGGCTGCTACATTACACGTGCACCAATTGGAGGAACATGACTCTGCGAAGTGGCAGCGACGGTCGCAGGCTGCTTTTGAGAAATTCGACATAGATAAGGATGGATATATTACTCCAGAGGAACTAAGAATGCATACTGGATTAAGGGGTTCCATTGATCCTCTGCTTGAGGAAGCTGACATTGACAAAGATGGAAAAATCAGCCTTCCGGAATTTCGCAGGCTCCTAAGAACTGCAAGCATCGGTTCTCGGAATTTACCAAGCCCCAGCAGCAATCGGCGTCATACAATCCTAGAATAG 1572 0.4485 MGACFSASKVVSGSNTTSHHNKHKQQQQHRHQQQRSTNKHVPCGKRTDFGYDKDFDDRYSLGKLLGHGQFGYTYVGIHKADGHRVAVKRLDKAKMVLPIAVEDVKREVKILKALAGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKNSRYSEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKENSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGKRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLSNMRQFVKYSRLKQFALRALASTLNEEELADLRDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSAKWQRRSQAAFEKFDIDKDGYITPEELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRNLPSPSSNRRHTILE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30228g00005 523 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Stsc30228g00005 523 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Stsc30228g00005 523 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Stsc30228g00005 523 Gene3D - 341 499 - -
Stsc30228g00005 523 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Stsc30228g00005 523 Gene3D - 360 429 - -
Stsc30228g00005 523 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Stsc30228g00005 523 Gene3D Phosphorylase Kinase; domain 1 52 144 - -
Stsc30228g00005 523 ProSiteProfiles EF-hand calcium-binding domain profile. 479 506 IPR002048 GO:0005509
Stsc30228g00005 523 SUPERFAMILY Protein kinase-like (PK-like) 56 333 IPR011009 -
Stsc30228g00005 523 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Stsc30228g00005 523 SMART serkin_6 59 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30228g00005 523 MobiDBLite consensus disorder prediction 22 36 - -
Stsc30228g00005 523 FunFam Calcium-dependent protein kinase 18 327 504 - -
Stsc30228g00005 523 Gene3D Transferase(Phosphotransferase) domain 1 145 340 - -
Stsc30228g00005 523 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Stsc30228g00005 523 SMART efh_1 403 431 IPR002048 GO:0005509
Stsc30228g00005 523 SMART efh_1 445 473 IPR002048 GO:0005509
Stsc30228g00005 523 SMART efh_1 475 503 IPR002048 GO:0005509
Stsc30228g00005 523 SMART efh_1 366 394 IPR002048 GO:0005509
Stsc30228g00005 523 FunFam CDPK-related kinase 1 52 144 - -
Stsc30228g00005 523 ProSiteProfiles Protein kinase domain profile. 59 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30228g00005 523 Pfam EF-hand domain pair 366 428 IPR002048 GO:0005509
Stsc30228g00005 523 Pfam EF-hand domain pair 448 500 IPR002048 GO:0005509
Stsc30228g00005 523 Pfam Protein kinase domain 59 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30228g00005 523 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Stsc30228g00005 523 FunFam calcium-dependent protein kinase 28-like 145 338 - -
Stsc30228g00005 523 MobiDBLite consensus disorder prediction 1 45 - -
Stsc30228g00005 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 34 488 - -
Stsc30228g00005 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Stsc30228g00005 523 CDD STKc_CAMK 58 318 - -
Stsc30228g00005 523 SUPERFAMILY EF-hand 348 502 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30228g00005 Stsc-Chr30228 30484 35371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30228g00005 1 513 EF-hand Containing Proteins AT2G17890 76.021 0.0 859
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc30228g00005 Pkinase 1.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30228g00005 K13412 - gmx:100798941 896.345