Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30227g00042 ATGAAGCCATTGAAGAACATTGTGAAGGAGTTAAGGGAGATTGGAGACGGAATTAGCAACATGTATAGAAACAACAACAAGAATAATAATGATAATGTTCTTCATCATCATCATCATCATCATCATCATAGACATGGAAAATCTCACATTGCACCTGAATGTTCATCACCAATATCATCATCATCATCATCACCATCACAATCATCAGTGTTGTCAGCATCATCAGCAACAAGATGTTGTTCTTCTTCAGCCATGGCAGCAAGAAGAGATCAGAGCAGGTGGGCTAACTTGCCACCTGAGTTGCTGATGGACATAATCAAGAGAGTTGAAGTAACTGAAACTTCATGGCCTTCTAGAAGAGCTGTTGTGGCATGCGCCTCTGTTTGTAGGACTTGGAGACACATAACAAAGGCTCTTGTTGACACACCTGAACAGTGTGGCTGGATCACTTTCCCTATCTCACTCAAGCAGCCTGGTCCAAGAGACACTCCAATACAATGTTTTATTAAGAGAGAAAGGGTATCTTCAACATATCGTTTATACCTTGGTCTCAGCCCTGCTCTTTCTGGTGATATGAGCAAGCTGCTACTTGCTGCAAAGAAGATCAGAAAGGCAACATGCACCGAATTCTTGATATCCTTGGTCGCGGACGATTTCTCGCGATCTAGCACTACTTACATCGGAAAACTAAGGTCTAATTTTCTTGGAACCAAGTTCATGATCTTGGATGGACAGCCTTCGCTCGATCCTCCTTCAATTCGATCGAGTTCCAAATCGCAGCAACGAGTCCACTTGAAGCAGGTTCTTCCAAGGGCTGCTTCTTCTTGTGCTAACTATAATGTGGCAACAGTCTCTTATGAACTCAATGTTCTTCGGACGAGAGGGCCGAGGCGAATGCGATGTTCAATGCACTTAATCCCTCTATCAGCAATCCAAGAAGGAGGAACTGCTCCAACTCCTTTGAATTTCACCAACTTCTTCAATGATCTTGAATGTACTACTATGTCTCTTTCGAAGTCAAAGAATCCGGGGACTGAAACCGGATCAACTAGCACTACTATCACTACTCCGGATTCAAGCCATTGTTCAAGAGAATCATCACTGGTTTTGAGAAACAAGGCTCCTAGATGGCATGAACAACTTCAGTGTTGGTGCTTGAATTTCAAAGGCCGAGTCACAGTTGCTTCTGTTAAGAACTTCCAGCTTGTTGCTGCCGTAGAACCTACTCAAAATAATGTTTCGGCCGCGGCGGATCAAGAGAAAGTGATACTGCAATTTGGAAAGATTGGGAAGGACATATTCACCATGGATTACCGGTATCCCCTCTCGGCCTTTCAAGCCTTCGCAATCTGTCTAAGCAGCTTCGACACCAAACCGGCTTGTGAATGA 1389 0.4377 MKPLKNIVKELREIGDGISNMYRNNNKNNNDNVLHHHHHHHHHRHGKSHIAPECSSPISSSSSSPSQSSVLSASSATRCCSSSAMAARRDQSRWANLPPELLMDIIKRVEVTETSWPSRRAVVACASVCRTWRHITKALVDTPEQCGWITFPISLKQPGPRDTPIQCFIKRERVSSTYRLYLGLSPALSGDMSKLLLAAKKIRKATCTEFLISLVADDFSRSSTTYIGKLRSNFLGTKFMILDGQPSLDPPSIRSSSKSQQRVHLKQVLPRAASSCANYNVATVSYELNVLRTRGPRRMRCSMHLIPLSAIQEGGTAPTPLNFTNFFNDLECTTMSLSKSKNPGTETGSTSTTITTPDSSHCSRESSLVLRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPTQNNVSAAADQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30227g00042 462 Pfam F-box domain 94 137 IPR001810 GO:0005515
Stsc30227g00042 462 Gene3D - 88 141 - -
Stsc30227g00042 462 PANTHER TUBBY-RELATED 20 460 - -
Stsc30227g00042 462 MobiDBLite consensus disorder prediction 53 69 - -
Stsc30227g00042 462 Pfam Tub family 155 457 IPR000007 -
Stsc30227g00042 462 MobiDBLite consensus disorder prediction 21 69 - -
Stsc30227g00042 462 ProSitePatterns Tub family signature 1. 388 401 IPR018066 -
Stsc30227g00042 462 ProSitePatterns Tub family signature 2. 447 462 IPR018066 -
Stsc30227g00042 462 SUPERFAMILY F-box domain 84 137 IPR036047 GO:0005515
Stsc30227g00042 462 Gene3D Tubby Protein; Chain A 152 462 IPR025659 -
Stsc30227g00042 462 PRINTS Tubby superfamily signature 278 305 IPR000007 -
Stsc30227g00042 462 PRINTS Tubby superfamily signature 226 250 IPR000007 -
Stsc30227g00042 462 PRINTS Tubby superfamily signature 370 387 IPR000007 -
Stsc30227g00042 462 PRINTS Tubby superfamily signature 210 226 IPR000007 -
Stsc30227g00042 462 PRINTS Tubby superfamily signature 419 438 IPR000007 -
Stsc30227g00042 462 PRINTS Tubby superfamily signature 388 404 IPR000007 -
Stsc30227g00042 462 PRINTS Tubby superfamily signature 440 462 IPR000007 -
Stsc30227g00042 462 MobiDBLite consensus disorder prediction 33 48 - -
Stsc30227g00042 462 MobiDBLite consensus disorder prediction 338 362 - -
Stsc30227g00042 462 CDD F-box_AtTLP-like 94 137 - -
Stsc30227g00042 462 SUPERFAMILY Tubby C-terminal domain-like 143 462 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30227g00042 Stsc-Chr30227 251060 253390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30227g00042 37 462 TUB Transcription Factor Family AT1G47270 57.377 1.11e-161 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc30227g00042 Tub 8.1e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30227g00042 K19600 - gmx:100796250 596.66