Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30227g00042 | ATGAAGCCATTGAAGAACATTGTGAAGGAGTTAAGGGAGATTGGAGACGGAATTAGCAACATGTATAGAAACAACAACAAGAATAATAATGATAATGTTCTTCATCATCATCATCATCATCATCATCATAGACATGGAAAATCTCACATTGCACCTGAATGTTCATCACCAATATCATCATCATCATCATCACCATCACAATCATCAGTGTTGTCAGCATCATCAGCAACAAGATGTTGTTCTTCTTCAGCCATGGCAGCAAGAAGAGATCAGAGCAGGTGGGCTAACTTGCCACCTGAGTTGCTGATGGACATAATCAAGAGAGTTGAAGTAACTGAAACTTCATGGCCTTCTAGAAGAGCTGTTGTGGCATGCGCCTCTGTTTGTAGGACTTGGAGACACATAACAAAGGCTCTTGTTGACACACCTGAACAGTGTGGCTGGATCACTTTCCCTATCTCACTCAAGCAGCCTGGTCCAAGAGACACTCCAATACAATGTTTTATTAAGAGAGAAAGGGTATCTTCAACATATCGTTTATACCTTGGTCTCAGCCCTGCTCTTTCTGGTGATATGAGCAAGCTGCTACTTGCTGCAAAGAAGATCAGAAAGGCAACATGCACCGAATTCTTGATATCCTTGGTCGCGGACGATTTCTCGCGATCTAGCACTACTTACATCGGAAAACTAAGGTCTAATTTTCTTGGAACCAAGTTCATGATCTTGGATGGACAGCCTTCGCTCGATCCTCCTTCAATTCGATCGAGTTCCAAATCGCAGCAACGAGTCCACTTGAAGCAGGTTCTTCCAAGGGCTGCTTCTTCTTGTGCTAACTATAATGTGGCAACAGTCTCTTATGAACTCAATGTTCTTCGGACGAGAGGGCCGAGGCGAATGCGATGTTCAATGCACTTAATCCCTCTATCAGCAATCCAAGAAGGAGGAACTGCTCCAACTCCTTTGAATTTCACCAACTTCTTCAATGATCTTGAATGTACTACTATGTCTCTTTCGAAGTCAAAGAATCCGGGGACTGAAACCGGATCAACTAGCACTACTATCACTACTCCGGATTCAAGCCATTGTTCAAGAGAATCATCACTGGTTTTGAGAAACAAGGCTCCTAGATGGCATGAACAACTTCAGTGTTGGTGCTTGAATTTCAAAGGCCGAGTCACAGTTGCTTCTGTTAAGAACTTCCAGCTTGTTGCTGCCGTAGAACCTACTCAAAATAATGTTTCGGCCGCGGCGGATCAAGAGAAAGTGATACTGCAATTTGGAAAGATTGGGAAGGACATATTCACCATGGATTACCGGTATCCCCTCTCGGCCTTTCAAGCCTTCGCAATCTGTCTAAGCAGCTTCGACACCAAACCGGCTTGTGAATGA | 1389 | 0.4377 | MKPLKNIVKELREIGDGISNMYRNNNKNNNDNVLHHHHHHHHHRHGKSHIAPECSSPISSSSSSPSQSSVLSASSATRCCSSSAMAARRDQSRWANLPPELLMDIIKRVEVTETSWPSRRAVVACASVCRTWRHITKALVDTPEQCGWITFPISLKQPGPRDTPIQCFIKRERVSSTYRLYLGLSPALSGDMSKLLLAAKKIRKATCTEFLISLVADDFSRSSTTYIGKLRSNFLGTKFMILDGQPSLDPPSIRSSSKSQQRVHLKQVLPRAASSCANYNVATVSYELNVLRTRGPRRMRCSMHLIPLSAIQEGGTAPTPLNFTNFFNDLECTTMSLSKSKNPGTETGSTSTTITTPDSSHCSRESSLVLRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPTQNNVSAAADQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 462 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30227g00042 | 462 | Pfam | F-box domain | 94 | 137 | IPR001810 | GO:0005515 | |
Stsc30227g00042 | 462 | Gene3D | - | 88 | 141 | - | - | |
Stsc30227g00042 | 462 | PANTHER | TUBBY-RELATED | 20 | 460 | - | - | |
Stsc30227g00042 | 462 | MobiDBLite | consensus disorder prediction | 53 | 69 | - | - | |
Stsc30227g00042 | 462 | Pfam | Tub family | 155 | 457 | IPR000007 | - | |
Stsc30227g00042 | 462 | MobiDBLite | consensus disorder prediction | 21 | 69 | - | - | |
Stsc30227g00042 | 462 | ProSitePatterns | Tub family signature 1. | 388 | 401 | IPR018066 | - | |
Stsc30227g00042 | 462 | ProSitePatterns | Tub family signature 2. | 447 | 462 | IPR018066 | - | |
Stsc30227g00042 | 462 | SUPERFAMILY | F-box domain | 84 | 137 | IPR036047 | GO:0005515 | |
Stsc30227g00042 | 462 | Gene3D | Tubby Protein; Chain A | 152 | 462 | IPR025659 | - | |
Stsc30227g00042 | 462 | PRINTS | Tubby superfamily signature | 278 | 305 | IPR000007 | - | |
Stsc30227g00042 | 462 | PRINTS | Tubby superfamily signature | 226 | 250 | IPR000007 | - | |
Stsc30227g00042 | 462 | PRINTS | Tubby superfamily signature | 370 | 387 | IPR000007 | - | |
Stsc30227g00042 | 462 | PRINTS | Tubby superfamily signature | 210 | 226 | IPR000007 | - | |
Stsc30227g00042 | 462 | PRINTS | Tubby superfamily signature | 419 | 438 | IPR000007 | - | |
Stsc30227g00042 | 462 | PRINTS | Tubby superfamily signature | 388 | 404 | IPR000007 | - | |
Stsc30227g00042 | 462 | PRINTS | Tubby superfamily signature | 440 | 462 | IPR000007 | - | |
Stsc30227g00042 | 462 | MobiDBLite | consensus disorder prediction | 33 | 48 | - | - | |
Stsc30227g00042 | 462 | MobiDBLite | consensus disorder prediction | 338 | 362 | - | - | |
Stsc30227g00042 | 462 | CDD | F-box_AtTLP-like | 94 | 137 | - | - | |
Stsc30227g00042 | 462 | SUPERFAMILY | Tubby C-terminal domain-like | 143 | 462 | IPR025659 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30227g00042 | Stsc-Chr30227 | 251060 | 253390 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30227g00042 | 37 | 462 | TUB Transcription Factor Family | AT1G47270 | 57.377 | 1.11e-161 | 460 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Stsc30227g00042 | Tub | 8.1e-103 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30227g00042 | K19600 | - | gmx:100796250 | 596.66 |