Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30227g00039 ATGGCCAATAATAAGGGTGTTACTAAAGCTTTGGAGAATCCAAATCCAAATCCTTGTAAAGATGTTAAGGTACATCTTTCAATATGCTTAGAACTTCAGAGATTCTTAGATAGAATCTTGCTCATAATATTAGCCACTGAATCAGCCAGACCAAATTGTAGTTTAGCAATTGAAGCACTTTGTTCATTACACCTCAATTTGAACAAAGCCAAGTCTATAATCAAACATTGCTCTGAGTGCAGTAAACTCTACCTGATATCTGCAATAATTCATGAACTTAAGGATACAGAATTTTCCCTAGAAAATGCAGAATTTGAAGCAAGAAAAGCAATTCTAGCATTGTATGAGAAGGACATAAATGATGATTCATCAACTTCTAATTCTTCTATGGAGAATGCAAAGCTTGAAGCAATTCAAATTGCAACTTCAAGGTTGGAAATAAACTCTCCATTATCTCTCATGGTAGAGAAATCATCACTTAGGAAGCAACTTGATCAAGTTAAAAATGAAACAAACCAAAAGGAGAAGGAACTTCTACAATACCTTTTGTATTTATTGATAAGATATGGCAAATTCATTCATCAAATTGGAACCAACTCTTTGGATCATGATTCATGA 618 0.3333 MANNKGVTKALENPNPNPCKDVKVHLSICLELQRFLDRILLIILATESARPNCSLAIEALCSLHLNLNKAKSIIKHCSECSKLYLISAIIHELKDTEFSLENAEFEARKAILALYEKDINDDSSTSNSSMENAKLEAIQIATSRLEINSPLSLMVEKSSLRKQLDQVKNETNQKEKELLQYLLYLLIRYGKFIHQIGTNSLDHDS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30227g00039 205 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30227g00039 Stsc-Chr30227 239903 242784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30227g00039 21 194 U-box Gene Family AT1G67530 31.429 1.02e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30227g00039 - - gmx:100796783 189.889