Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30227g00034 ATGGAGACGGAAGCTGTGAAGAAAAGGAAAAAGGATTTAACGAGCAATGTCACGACTCCACCTGAGTCTTCACCGTGTTTCGAGTGCGAAATCTGCACGGTTACTAAAACAGAAGCAAATTGTTTCGCCGTGACCGGATGCACCCACGCATACTGTAAGGACTGTATCGTGAGGTATATCCGGTCAAAGCTTGATCTGAACATCATTAACATCCGGTGTCCGGTTCCCCGTTGCGGCGGTCTCTTGGAATCCGAGAGTTGCCGGAAAATCCTTCCGAAAAAGGTTTTCGACCGGTGGGAAAAATCTCTATGTGAATCTGCTATAATTGATAACGAGACCAAGAAGTTCATGTATTGTCCCTTGAAACGTTGTTCTGCCCTTATGATCCTCGGCGACGAGGATCATAAGAACAAGATGACGAAATCGAAGTGCCTTGTGTGTAAGAAGCAAATTTGTGTTCAATGCAATGTGGCATGGCATGAAGGGTATACATGTGAGGAGTTTAAGAAGGATTATGAAGAAGCCAGAGCGCTGGTAAATCTGGCGTATTGGAAGAAATGGAGGAAGTGCCCCAAGTGCAAAATGTATGTTGAGAAAGCTGGAGGATGTCCTTTTATGCATTGCAGATGTGGAAATACTTTCTATTACGGAAGTTCGTCTCGTCCAAGATCGCTCTAA 678 0.4499 METEAVKKRKKDLTSNVTTPPESSPCFECEICTVTKTEANCFAVTGCTHAYCKDCIVRYIRSKLDLNIINIRCPVPRCGGLLESESCRKILPKKVFDRWEKSLCESAIIDNETKKFMYCPLKRCSALMILGDEDHKNKMTKSKCLVCKKQICVQCNVAWHEGYTCEEFKKDYEEARALVNLAYWKKWRKCPKCKMYVEKAGGCPFMHCRCGNTFYYGSSSRPRSL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30227g00034 225 MobiDBLite consensus disorder prediction 1 15 - -
Stsc30227g00034 225 CDD BRcat_RBR_unk 114 168 - -
Stsc30227g00034 225 ProSiteProfiles TRIAD supradomain profile. 25 225 IPR044066 -
Stsc30227g00034 225 SUPERFAMILY RING/U-box 112 171 - -
Stsc30227g00034 225 Pfam IBR domain, a half RING-finger domain 98 165 IPR002867 GO:0008270
Stsc30227g00034 225 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Stsc30227g00034 225 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 216 IPR031127 GO:0004842|GO:0016567
Stsc30227g00034 225 FunFam RBR-type E3 ubiquitin transferase 24 110 - -
Stsc30227g00034 225 SMART ibrneu5 97 165 IPR002867 GO:0008270
Stsc30227g00034 225 MobiDBLite consensus disorder prediction 1 24 - -
Stsc30227g00034 225 ProSiteProfiles Zinc finger RING-type profile. 29 77 IPR001841 -
Stsc30227g00034 225 Gene3D - 163 221 - -
Stsc30227g00034 225 SUPERFAMILY RING/U-box 24 106 - -
Stsc30227g00034 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 109 IPR013083 -
Stsc30227g00034 225 SUPERFAMILY RING/U-box 172 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30227g00034 Stsc-Chr30227 194960 196664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30227g00034 5 216 C3H Transcription Factor Family AT2G19610 30.973 6.68e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30227g00034 K11975 - twl:120005643 213.386