Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30227g00031 ATGAAGGTGAAGAAGTTGAAGAGTTTTACCATTATGCCCCTGTTCTTCTTCTTCTTATTCAGTTCTGCTTTGAGTTCAAGCACTGAAAAGCTGAGTTCAAGAACCGAATGGTTATCATTGCTTCAACTTCGATCTTCATTGGGTATAAGAGCAAAAAACTGGCCCAAAAAAACCGAACCGTGCCGGAACTGGACCGGGATTCATTGCCGAAACGGTTCAGTTATCGGAATCAATATCTCTAATTTCAGACGAACACATAAAGCTAGGGTTCATCCAAGTTTCTCAGTTGATGCACTTGCCAATTTCACCTTCTTAGCTTCCTTCAATGCTTCAGGTTTTGTGCTTAATGGTTCTATTCCTGAGTGGTTTGGTGAGGAGAACAACAATAACAATGGCAACTACCTTGGTGCACTCCAGGTGCTTGATTTAAGTTCTTGTTCAATAACTGGCTCAATTCCTGAGTCAATTGGTGGTTTGGTTTTGTTGAAGTCTCTGTTGCTTTCTGGTAATAGTTTAACTGGTAGAATGCCTTCAAGTTTGGGAATGTTGTCTATGCTATCTGTGCTTGATCTCTCAGGAAATGATCTTTCTGGGTCTATTCCTGATTCCTTGTTTTCACTTGGTAACCTCACAAGTCTTGATCTTTCTTCCAATTACTTATCTGGGAATGTTCCGAATCAACTCGGTAACCTTTCAATGCTTGAAACTTTGGACCTTTCCAACAATGCACTAACTGGCAATGTGCCTAGTGTCTTGTTTTCTAGGCTTTCGAAGCTTCGAGTTCTTAAATTGAGTGGTAACTCTATTGATGGTGGTTTTCCTGATTCCTTGTGTTCGTTACCGAGCTTGCGTTTCGCTGATGTGTCCAACAACAGCCTTACCGGTCGTCTGCCGAAGTTTTTCGGTTCAAATGCTAGCTCTACTGATGCCACATTCAATCTCTCAAATAACTTATTCTTTGGAACTCTAAATATTTCGGCTAAAAAGTTTAGAATGATCGATCTGTCCGGTAATTATTTGGAAGGCGAGGTGCAAGGTGTTAGTCTTAGTAATGTTAGTTTAGCAAGGAATTGCCTGGAGAATATTCCAAACCAGAGGGATGTTAGTGTTTGTAGAGTGTTTTATGTGCAGAGAAATCTACCCTTTCCAGAAAATCCGACAATGAAAAAATCTTCCAGAAAGAAACTGATATTCATACTGGCAGGTGTATTTGGTGGGCTTGGATTTATCTTGCTTCTGGCATTGGCCCTCATACTGTTCTTAAAACTATGTGGCAACCATAAAAGCTTGGAAGTTCAAAGGGGGACAGAAAGTGGAGGGCCTGTTCCGGAAGGGACGAGTCCTATGCCACCTAAAGACCTTGCATTCGACATTGCTGTCGGGGAACCATTTACTTATGATCAAATTCTCAAGTTGACTGGTAATTTTGCTGATGCAAATATCATCAAGCATGGTCATTCTGGAGACCTCTTCTGGGGAGTAATGGAAAACGGAGCTACTGTCGTCATCAAAAAGGTAGATTTGAGTTTGTTCAAGAGAGAATCATATGTTGTGGAATTGGAATTGTTAAGCAAGGTTTCACATGCAAGATTGATCCCAATCTTGGGGCATTGCTTGGAGAATGAGAATGAGAAATGTATAGTTTACAAGTATATGCCAAATGGAGATTTGGCAAGTTCTTTGCAGAGAGTCACTGATGCAGATGGTAAATCAAAGTCCCTTGATTGGATCACAAGACTGAAAATCGCTACGGGAGCTGCCGAAGGCCTTGCTTTTCTACACGATTGCAGCCCTCCCCTCGCTCACAGAGATGTTCAAGCTAGCAGCATACTTCTTGATGATAAATTTGAAGTGCGACTCGGAAGTTTGAGTGAGGTTACCACCCAAGGAGATTTCCATCCTGGTGTCATGAACAGGCTGTTCAGCAAGCCGTCATCTTCTAATCAACCAAATTTTGGCACATCATCAGTGACTTGGGCAGGTGATGTATATGGTTTCGGTAAGATTTTGCTCGAGCTTATTACCGGAAATACTGAGGTCAGCAAATCAGACGATGCCACCTCAAGAGAGTGGTTGGAGCAAACCTTGCCTTACATTAGCATAGATGATAAAGAACGGATAAACAAGATCGTCGACCCTTCTTTGATAGTAGATGAGGATCTACTAGAAGAAGTATGGGCTATGGCAATTGTGGCAAGATCATGCCTGAATCCAAGGCCTTCGAAGCGTCCTCCTATGAGACACGTCCTCAAAGCGCTGGAAAATCCATTGAAGGTTGTAAGAGAAGAAAGCGCAAGCTCGGTGAAGTTGCGAACAACTTCGTCTAGGAAGTCTTGGAGCACCGGATTCTTCGGTAGCTGGAGACAGAGCTCATCAGATAGTGCTACTGCAACGAACAAAGATAGTTCGAGTGGCACTAAACAATCAGGGAAAGTAAGTTCCCAAGGAAGTGGTGTAATGGATCACTCATCTTCCAATAAAAGATCATCCAAATCCAATGAAGTTTTCCCTGAACCATTGGAAACACAAGATGTGGAGATTGGTGAGGGAAGATGA 2556 0.4233 MKVKKLKSFTIMPLFFFFLFSSALSSSTEKLSSRTEWLSLLQLRSSLGIRAKNWPKKTEPCRNWTGIHCRNGSVIGINISNFRRTHKARVHPSFSVDALANFTFLASFNASGFVLNGSIPEWFGEENNNNNGNYLGALQVLDLSSCSITGSIPESIGGLVLLKSLLLSGNSLTGRMPSSLGMLSMLSVLDLSGNDLSGSIPDSLFSLGNLTSLDLSSNYLSGNVPNQLGNLSMLETLDLSNNALTGNVPSVLFSRLSKLRVLKLSGNSIDGGFPDSLCSLPSLRFADVSNNSLTGRLPKFFGSNASSTDATFNLSNNLFFGTLNISAKKFRMIDLSGNYLEGEVQGVSLSNVSLARNCLENIPNQRDVSVCRVFYVQRNLPFPENPTMKKSSRKKLIFILAGVFGGLGFILLLALALILFLKLCGNHKSLEVQRGTESGGPVPEGTSPMPPKDLAFDIAVGEPFTYDQILKLTGNFADANIIKHGHSGDLFWGVMENGATVVIKKVDLSLFKRESYVVELELLSKVSHARLIPILGHCLENENEKCIVYKYMPNGDLASSLQRVTDADGKSKSLDWITRLKIATGAAEGLAFLHDCSPPLAHRDVQASSILLDDKFEVRLGSLSEVTTQGDFHPGVMNRLFSKPSSSNQPNFGTSSVTWAGDVYGFGKILLELITGNTEVSKSDDATSREWLEQTLPYISIDDKERINKIVDPSLIVDEDLLEEVWAMAIVARSCLNPRPSKRPPMRHVLKALENPLKVVREESASSVKLRTTSSRKSWSTGFFGSWRQSSSDSATATNKDSSSGTKQSGKVSSQGSGVMDHSSSNKRSSKSNEVFPEPLETQDVEIGEGR 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30227g00031 851 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 392 788 - -
Stsc30227g00031 851 FunFam Predicted protein 451 551 - -
Stsc30227g00031 851 Gene3D Ribonuclease Inhibitor 203 387 IPR032675 -
Stsc30227g00031 851 ProSiteProfiles Protein kinase domain profile. 476 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30227g00031 851 Gene3D Phosphorylase Kinase; domain 1 455 551 - -
Stsc30227g00031 851 MobiDBLite consensus disorder prediction 787 837 - -
Stsc30227g00031 851 Pfam Leucine rich repeat 248 293 IPR001611 GO:0005515
Stsc30227g00031 851 Pfam Leucine rich repeat 186 244 IPR001611 GO:0005515
Stsc30227g00031 851 FunFam Putative LRR receptor-like serine/threonine-protein kinase 552 773 - -
Stsc30227g00031 851 Pfam Protein tyrosine and serine/threonine kinase 482 752 IPR001245 GO:0004672|GO:0006468
Stsc30227g00031 851 SUPERFAMILY RNI-like 96 363 - -
Stsc30227g00031 851 MobiDBLite consensus disorder prediction 787 851 - -
Stsc30227g00031 851 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 132 224 - -
Stsc30227g00031 851 Pfam Leucine Rich Repeat 138 159 IPR001611 GO:0005515
Stsc30227g00031 851 Gene3D Ribonuclease Inhibitor 33 202 IPR032675 -
Stsc30227g00031 851 PRINTS Leucine-rich repeat signature 231 244 - -
Stsc30227g00031 851 PRINTS Leucine-rich repeat signature 210 223 - -
Stsc30227g00031 851 SMART LRR_typ_2 231 255 IPR003591 -
Stsc30227g00031 851 SMART LRR_typ_2 135 159 IPR003591 -
Stsc30227g00031 851 SMART LRR_typ_2 256 280 IPR003591 -
Stsc30227g00031 851 SMART LRR_typ_2 183 207 IPR003591 -
Stsc30227g00031 851 Gene3D Transferase(Phosphotransferase) domain 1 552 776 - -
Stsc30227g00031 851 SUPERFAMILY Protein kinase-like (PK-like) 457 753 IPR011009 -
Stsc30227g00031 851 Pfam Leucine rich repeat N-terminal domain 38 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30227g00031 Stsc-Chr30227 165807 169439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30227g00031 35 644 Miscellaneous Gene Families AT2G16250 47.181 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Stsc30227g00031 PK_Tyr_Ser-Thr 1.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30227g00031 - - aip:107635843 1119.76