Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30226g00055 ATGGCTGCAACTCCAATCAAGTCTCTACAATCTCCTTCTAAGCCTAATCTCAGATCTCAATCGAATCGCAAATCCTCACCCGCCGTGACTCCACTCACTCCACAATCCCTGCCACCTCCACGCAGATCCACGCGCCAACGGTCCCTGCACTTCAACTCCACCGAACCCTCCTCGTTTCCCCAATCCATCGCCGATGATTCCACCGAAGTGATAAAGCGTAGAAGTGGAACTACGCGAAGTGCTTCGATTGTTAAAGGCGGATCTGAAAAGAAGGGTGGTGAGGAAGTGAAGCTAACAAATGAGAAAGCCAAGGATTTTGTTGAGGTTAGATTTGCTCCGGCATCACCTGAGCAGTCGGAAACGAAGAAGAGGAAGAAGGAGAGTGAGAGAAAGGTTGTTACCAGAGCCATGGCTGCAAAAAAGGGGAAACTGGAAAGTGGAGAAAAGGGTGGCAAAAAGGATGGGAGGTCGACTAAGCGTCGCGTGTATTATAAGAAGGTGGTTTATGATGGAGGCGAATTTGAAGTTGGTGATGATGTTTATGTGAAGAGGAGGGAAGATGCTAGCTCCGATGATGAAGATCCTGAAATGGAGGAGTGCAGGGTGTGCTTTGATTCTGGGAGTGAGGTAATGATTGAGTGTGATGATTGTTTAGGTGGGTTTCACTTGAAGTGCTTGACGCCTCCATTGAAGGAGGTTCCTGAAGGGGATTGGGTATGTGGATTCTGCGAGGATCGTAAGATGGGTCGTCAAATTAGATTTCCGAAGCCGCCTGAGGGTAAGAAACTAGCTAGGACATTGAGGCAGAAGCTTCTATCAAGTGATTTATGGGCTGCTCATATTGAGAGTATATGGAAAGAAGTGGATGGCAACTACTGGAGTCATGTACGGTGGTATGTGATCCCAGAAGAGACTTCTGCTGGTAGACAACCTCATAACCTGAGCAGGGAACTTTATCAAACCAATGAATTTGCAGACATTGAGATGGAATCTGTCCTTAGACATTGCTTTGTTATGACCCCCAAAGACTATGCTAAGGCTAGCAATGAGGGAGATGATATTTTTGTATGTGAATATGAATATGACATTCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAAAGAGGTTGGTGAAGAGATTGACAGTGATGAAGATTGGAATGTTTCCAAGGAATCAGACTCTGATACAGATGATGATATTATATATGAAGAGGAGAATTTTAAAAATACACGAACTCAACCATCAACAAGTCATCAGTTCGCTGCAAATCAATACAAAGGACGGTTCTATGGACTTCAGAAGATAGGTGTAAAACGAATTCCAGAGCATGTAAGGTCTCACAAACAAACAGATCTTGAGAGAGCAAAGGCTTCACTATTGTTAGCATCATTGCCTAAATCGTTACCATGTAGAAATAAAGAAATGGAGGAGATAAATTCATTCATTAAAGGTGCTATTTGTGATGATCAATGTCTTGGGCGTTGCCTTTATATTCATGGTGTTCCAGGAACTGGCAAGACAATGAGTGTCCTATCAGTAATGAGGAGTTTGAGATCTGAAGTTGATGCAGGAAACATCAGACCCTATTGTTTTGTGGAGATTAATGGTCTGAAGTTGGCATCACCAGAGAATATATATAGGGTCATATATGAGGCATTAAATGGGCACAGGGTCAGCTGGAAAAAGGCTCTTCACTTCCTGAATGAGAGATTTGTTGAAGGGAAGAAGACTGGGAAAGATGCTGACCGCCCTTGTATTTTGCTTATTGATGAGCTTGATCTTCTTGTAACCAGAAACCAGTCGGTACTGTACAATATTCTTGACTGGCCTACTAAGGCACATTCCAAACTTATTGTGATAGGGATAGCAAATACCATGGATCTTCCAGAGAAGTTACTTCCTCGCATATCGAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCAAGTCGCCTTAAAGGAATCGATATATTTGAAAAGCAAGCCATAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGAGATGCACGGCGTGCCTTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGCATAAAGAAGCTAACTGCAAATCCTGATTTTGCTGCGGCAGGAAAAGGGCTTGTTGGTATGAGTGATGTTGAAGCAGCCATTCAAGAGATGTTCCAGGCACCTCATATTCAAATGATAAAAAGCTGTTCCAGACTTAGCAAAATCTTCCTGACAGCTATGGTTCATGAACTTTATAAAACAGGAATGGGGGAAACCACCTTTGAAAAGCTGGCGATGACGGTTTCGTGTCTATGTACAAGCAACGGTGAAGTTTGTCCCGGATATGATACTCTTCTGCAAGTTGGCTGTAAGCTAGGAGAATGCAGGGTTATTTTATGTGAAGCAGGTGCTAAGCACAGGCTGCAAAAATTGCAACTCAATTTCCCAAGCGATGATGTAGCCTTTGCACTGAGAGACTGTAAGGATGTTCTTTGGCTGTCGAAGTATCTAGGGCAGATTCCAGATCTTCGGGGTGTTGATGAGTATTCTGTTTGGAAAAATATCCAACTCAGATGTGAAGGTTGTTCATCTCAACCAATTGAAGTTGAGATAGATGTTCAGCTATCCACTAACAAGTTCAAATTCAACGGAAGAAAGGAGCAAGCAGGTGAGGGGAAACAAAAAGGCATGGCGTTCCCAGCTGCAGTTGTTATTCTTCCTGCAGGCACACTTTTCATTCTCTCAGGCATTATTGTTAACGCAATTCAGATAGTCGTCTTTGTCCTTATTCGTCCAATCTCAAGGAATTTATTCAGAAGAATAAACAGAGTCCTTACTCAATCACTATGGTTGCAGCTCACATTTCTCATTGATTGGTGGGGAGGCATTAAGATTGAAGTGCATTCGGATTCAGAAACTCGCCAATTAATGGGTAGGTTGACATCAACTTTGCTGGTTAAGAGTGACATTGATTGGCTCATTGGATACGCCTTAGCTCAGCGCTCGGGTTGCCTTGGCAGCTCTCTAGCCATTATGAAGAAAGAGCTCAAGTACCTTCCAGTTATAGGTTGGTCAATGTGGTTTGCTGATTACATATTTCTAGAAAGAGAATGGGCAAAAGATGAAACAACACTGAGTTCAGGTCTTAAGCAGCTAGAGGATTACCCACTACCTTTTTGGTTGGCTCTTTTTGTTGAAGGAACTCGTTTCACACCAGATAAGCTTCTAGCAGCTCAAGCATTTGCTGCTTCAAGAGGCCTACCTATCCCTAAAAATGTTTTGATTCCCCGTACTAAGGGTATTGTCTGTGTAGTCGAAAATATCCGGAGTTTCACTCCAGCTGTTTATGATTGCTCATATTCAGTTAAGAAAGGCGATACTCCTCCAACAATGTTGAGAATATTTAAAGGTCAATCTTCTTCGGTGAAAGTTCAAATACAACGACTCAAAATGGAGGAACTGCCACATACACCTAATGAAATTGCACAATGGTGCAAAGACCTATTTATATCCAAGGATGCTATGTTGGAGAGATATAATACTACGGATATTTTCAGTGATGCAGAAATTCAAGAAATGGGTCGGTCTAAGATATCTATTTTTGTTGTGCTTTGTTGGAGTTGTCTCCTTGGGTTCCTCCTTTATGAGTTCTTCAAGTTGACCTCACTGCTGTCCACCTGGGTAGGGATCTCATGCACAGTGCTATTCTTTGTAATAGTCACACTTATTATGGAAATCCTCATTCATTCAACTCAATCTGAACGTTCTACACGCATGAATTTGCCTACACAAGATCCCATGAGGCAGAAGCTTCTTCAGTGA 3867 0.4254 MAATPIKSLQSPSKPNLRSQSNRKSSPAVTPLTPQSLPPPRRSTRQRSLHFNSTEPSSFPQSIADDSTEVIKRRSGTTRSASIVKGGSEKKGGEEVKLTNEKAKDFVEVRFAPASPEQSETKKRKKESERKVVTRAMAAKKGKLESGEKGGKKDGRSTKRRVYYKKVVYDGGEFEVGDDVYVKRREDASSDDEDPEMEECRVCFDSGSEVMIECDDCLGGFHLKCLTPPLKEVPEGDWVCGFCEDRKMGRQIRFPKPPEGKKLARTLRQKLLSSDLWAAHIESIWKEVDGNYWSHVRWYVIPEETSAGRQPHNLSRELYQTNEFADIEMESVLRHCFVMTPKDYAKASNEGDDIFVCEYEYDIHWHSFKRLADIDNEKEVGEEIDSDEDWNVSKESDSDTDDDIIYEEENFKNTRTQPSTSHQFAANQYKGRFYGLQKIGVKRIPEHVRSHKQTDLERAKASLLLASLPKSLPCRNKEMEEINSFIKGAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIRPYCFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHFLNERFVEGKKTGKDADRPCILLIDELDLLVTRNQSVLYNILDWPTKAHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDIFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKLTANPDFAAAGKGLVGMSDVEAAIQEMFQAPHIQMIKSCSRLSKIFLTAMVHELYKTGMGETTFEKLAMTVSCLCTSNGEVCPGYDTLLQVGCKLGECRVILCEAGAKHRLQKLQLNFPSDDVAFALRDCKDVLWLSKYLGQIPDLRGVDEYSVWKNIQLRCEGCSSQPIEVEIDVQLSTNKFKFNGRKEQAGEGKQKGMAFPAAVVILPAGTLFILSGIIVNAIQIVVFVLIRPISRNLFRRINRVLTQSLWLQLTFLIDWWGGIKIEVHSDSETRQLMGRLTSTLLVKSDIDWLIGYALAQRSGCLGSSLAIMKKELKYLPVIGWSMWFADYIFLEREWAKDETTLSSGLKQLEDYPLPFWLALFVEGTRFTPDKLLAAQAFAASRGLPIPKNVLIPRTKGIVCVVENIRSFTPAVYDCSYSVKKGDTPPTMLRIFKGQSSSVKVQIQRLKMEELPHTPNEIAQWCKDLFISKDAMLERYNTTDIFSDAEIQEMGRSKISIFVVLCWSCLLGFLLYEFFKLTSLLSTWVGISCTVLFFVIVTLIMEILIHSTQSERSTRMNLPTQDPMRQKLLQ 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30226g00055 1288 Gene3D - 648 741 - -
Stsc30226g00055 1288 FunFam Origin recognition complex subunit 1 263 455 - -
Stsc30226g00055 1288 Gene3D - 254 453 IPR043151 -
Stsc30226g00055 1288 CDD LPLAT_LCLAT1-like 969 1162 - -
Stsc30226g00055 1288 ProSiteProfiles Zinc finger PHD-type profile. 197 246 IPR019787 -
Stsc30226g00055 1288 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 937 1091 - -
Stsc30226g00055 1288 FunFam Origin recognition complex subunit 1 453 652 - -
Stsc30226g00055 1288 MobiDBLite consensus disorder prediction 88 108 - -
Stsc30226g00055 1288 MobiDBLite consensus disorder prediction 39 65 - -
Stsc30226g00055 1288 FunFam Origin recognition complex subunit 1 195 262 - -
Stsc30226g00055 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 709 IPR027417 -
Stsc30226g00055 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 253 IPR013083 -
Stsc30226g00055 1288 Pfam AAA lid domain 674 707 IPR041083 -
Stsc30226g00055 1288 MobiDBLite consensus disorder prediction 1 131 - -
Stsc30226g00055 1288 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 304 845 - -
Stsc30226g00055 1288 Pfam BAH domain 280 369 IPR001025 GO:0003682
Stsc30226g00055 1288 SMART BAH_4 231 372 IPR001025 GO:0003682
Stsc30226g00055 1288 SMART AAA_5 496 650 IPR003593 GO:0016887
Stsc30226g00055 1288 Pfam Acyltransferase C-terminus 1148 1221 IPR032098 -
Stsc30226g00055 1288 SUPERFAMILY FYVE/PHD zinc finger 186 248 IPR011011 -
Stsc30226g00055 1288 SMART plsc_2 998 1117 IPR002123 GO:0016746
Stsc30226g00055 1288 MobiDBLite consensus disorder prediction 117 131 - -
Stsc30226g00055 1288 MobiDBLite consensus disorder prediction 380 399 - -
Stsc30226g00055 1288 FunFam Origin recognition complex subunit 1 649 741 - -
Stsc30226g00055 1288 ProSiteProfiles BAH domain profile. 255 372 IPR001025 GO:0003682
Stsc30226g00055 1288 Pfam PHD-finger 200 245 IPR019787 -
Stsc30226g00055 1288 ProSitePatterns Zinc finger PHD-type signature. 200 243 IPR019786 -
Stsc30226g00055 1288 SMART PHD_3 199 244 IPR001965 -
Stsc30226g00055 1288 MobiDBLite consensus disorder prediction 1 31 - -
Stsc30226g00055 1288 Pfam Acyltransferase 1003 1123 IPR002123 GO:0016746
Stsc30226g00055 1288 Gene3D - 454 647 IPR027417 -
Stsc30226g00055 1288 Pfam ATPase family associated with various cellular activities (AAA) 501 646 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30226g00055 Stsc-Chr30226 233185 245017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30226g00055 7 852 Core DNA Replication Machinery Family AT4G14700 61.027 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc30226g00055 AAA 3.4e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30226g00055 K02603 - gmx:100798547 1335.86