Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30226g00050 ATGAGGAAGTTAGAGGATGCATGTGGTGGTAGTTACAGTAATGATAACGACGACCACGACAACAAGAAGAATAAGCTAAGGAAGGGGTTATGGTCACCGGAAGAAGATGAGAAGCTTATGAATTACATGATGAACAATGGACAAGGTTGTTGGAGTGAAGTGGCTAAGAATGCTGGGTTGCAAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATCAATTACTTGAGGCCTGATCTTAAGAGAGGTGCCTTCTCCCCACAGGAAGAGCAACTTATCCTCCATTTACATTCCCTTCTTGGCAACAGATGGTCTCAAATAGCGGCGCAGTTACCTGGTCGAACTGACAATGAAATCAAGAATTTTTGGAATTCAACAATGAAGAAAAGGATCACTACCACCACCTCATCAAACACTACAAGTGAGTCTAATAACTCATCATGGCCTGAACCGGATCATAGCAGCAAGGAAGGATTTACAATGATGCCTATGATCAGTTGTTCATCGTCATCTCAATCACCACCAATCGTTATTGATGAGAGGTTGCCTATGCTGATGGAGAATAATAATAATAATAATAATAATGGACTGAATAAAAATAATGTAGAAGAAAGGGATGATAGTAATGTATGTGTTCCTCCTTTACCAGAGAGTAGGAGCAAGGGAGAGAATAACAACGTTTATTTTGATGATAATAATAAGGTTGCTGGTGTGGAGGAGGATTATTCATTTCAAGAAGAATTAATTAGCATGGAAGAGTGGGACTTGGAGGAATTCATCAACAAAAGTGCATCCTCCTCCTTTCAGTTTCTTGATTTTACACTATCATCATCATGA 834 0.3993 MRKLEDACGGSYSNDNDDHDNKKNKLRKGLWSPEEDEKLMNYMMNNGQGCWSEVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEQLILHLHSLLGNRWSQIAAQLPGRTDNEIKNFWNSTMKKRITTTTSSNTTSESNNSSWPEPDHSSKEGFTMMPMISCSSSSQSPPIVIDERLPMLMENNNNNNNNGLNKNNVEERDDSNVCVPPLPESRSKGENNNVYFDDNNKVAGVEEDYSFQEELISMEEWDLEEFINKSASSSFQFLDFTLSSS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30226g00050 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Stsc30226g00050 277 MobiDBLite consensus disorder prediction 129 152 - -
Stsc30226g00050 277 Gene3D - 82 155 - -
Stsc30226g00050 277 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Stsc30226g00050 277 Gene3D - 25 81 - -
Stsc30226g00050 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Stsc30226g00050 277 PANTHER MYB DOMAIN PROTEIN 55 21 246 - -
Stsc30226g00050 277 FunFam MYB transcription factor 25 81 - -
Stsc30226g00050 277 FunFam Myb transcription factor 83 130 - -
Stsc30226g00050 277 CDD SANT 83 123 IPR001005 -
Stsc30226g00050 277 SMART sant 27 77 IPR001005 -
Stsc30226g00050 277 SMART sant 80 128 IPR001005 -
Stsc30226g00050 277 SUPERFAMILY Homeodomain-like 26 122 IPR009057 -
Stsc30226g00050 277 MobiDBLite consensus disorder prediction 189 209 - -
Stsc30226g00050 277 MobiDBLite consensus disorder prediction 129 159 - -
Stsc30226g00050 277 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Stsc30226g00050 277 CDD SANT 31 75 IPR001005 -
Stsc30226g00050 277 MobiDBLite consensus disorder prediction 1 30 - -
Stsc30226g00050 277 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Stsc30226g00050 277 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30226g00050 Stsc-Chr30226 213722 214966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30226g00050 1 130 MYB Transcription Factor Family AT5G12870 74.615 8.79e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30226g00050 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30226g00050 K09422 - gmx:100786151 246.128