Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30226g00042 ATGGGAAGTTGTTGCAGCAAACTCTGCATATGCTGGTGGCCCTGCTGCTGCTGCTGCAAAAGATCAAATCTTCAGGACTTACCCGAAAATGAAGATGGGGGGAACAACAAGGGTGAGAAGAAGGGTCCTGCCAGCTCTACCTTCACTGAGTTCAGCTTCGACCAACTGAAAACTGCCACGTCAGCATTCTCCCCCGACAACATTGTCTCTGAACACGGTGAGAAGGCTCCCAACGTTGTCTACAAAGGGAGGCTTGAAGATGATAAGCTTGTTGCTGTGAAGCGATTCAACAAGTCTGCTTGGCCTGATTCTCGACAGTTCCTGGAGGAGGCACGGGCAGTGGGGCAGCTGAGGAGCGAGCGTTTGGCTAACTTGGTTGGGTGTTGCTGTGAAGGAGAAGAGAGGTTGCTCGTGGCGGAGTTTATGCCCAATGAAACTCTCTCCAAACACCTCTTTCACTGGGAGTCCCAGCCCATGAAATGGGCTATGAGGCTGAGAGTTGCCTTGTATTTGGCACAAGCATTGGAATATTGCAGCAGTCAAGGAAGGGCACTATACCATGATCTTAATGCTTATAGAATTTTGTTCGATCAGGATGGCGATCCTAGACTCTCTTGTTTTGGACTAATGAAAAACAGCAGAGATGGCAAAAGTTACAGTACAAATTTAGCCTTCACCCCTCCAGAGTATTTAAGGACAGGAAGAATCATCCCAGAAAGTGTGATTTACAGTTTTGGAACTCTTTTGCTTGATCTTCTTAGTGGCAAGCATATTCCACCAAGTCATGCACTTGACCTTATACGAGGCAAAAATTTTTCATTGCTGATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAAATAGTGAGACTAGCTTCACGTTGTTTACAATATGAACCTCGGGAGAGGCCAAATGCCAAGTCGCTTGTGACTGCTTTAACTCCTCTTCAGAAAGAAGCTTCAGTACCTTCGCAAGTTTTGATGGGCATACTGGAGGAGGGTGCGTCATCAAAAGAAACAGTTTCATTGACACCTTTTGGTGAAGCTTGTTCTAGAAGAGATCTCACTGCAATATATGAAATATTGGAAAAGGTTGAGTATAAGGATGATGAGGATGTTGCAAATGAGCTTTCCTTCCAAATGTGGACAGATCAAATACAAGAAACCCTAAATGCTAAGAAGCATGGAGATTCAGCTTTTCGTGCCAAAAATTACTCTACAGCCATTGACTACTATACACAATTCATTGATGGCGGGACCATGGTATCGCCGACGGTTTATGCAAGGCGCTGCTTGTGTTACTTGATGAACAACATGCCACAAGAAGCTCTTGGAGACGCCATGCAAGCTCAATCGATATCACCGACCTGGCCAACCGCATTCTATCTTCAAGCAGTGGCACTCTTCAGCCTTGGCATGGACAATGATGCCCAGGAAAGTCTTAAAGACGGCACAATGCTTGAATCCAGAAACCAGAGAAATTGA 1497 0.4536 MGSCCSKLCICWWPCCCCCKRSNLQDLPENEDGGNNKGEKKGPASSTFTEFSFDQLKTATSAFSPDNIVSEHGEKAPNVVYKGRLEDDKLVAVKRFNKSAWPDSRQFLEEARAVGQLRSERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWESQPMKWAMRLRVALYLAQALEYCSSQGRALYHDLNAYRILFDQDGDPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRIIPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFSLLMDSCLEGHFSNDDGTEIVRLASRCLQYEPRERPNAKSLVTALTPLQKEASVPSQVLMGILEEGASSKETVSLTPFGEACSRRDLTAIYEILEKVEYKDDEDVANELSFQMWTDQIQETLNAKKHGDSAFRAKNYSTAIDYYTQFIDGGTMVSPTVYARRCLCYLMNNMPQEALGDAMQAQSISPTWPTAFYLQAVALFSLGMDNDAQESLKDGTMLESRNQRN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30226g00042 498 SUPERFAMILY Protein kinase-like (PK-like) 43 322 IPR011009 -
Stsc30226g00042 498 FunFam probable serine/threonine-protein kinase At4g35230 391 498 - -
Stsc30226g00042 498 Gene3D Tetratricopeptide repeat domain 391 498 IPR011990 GO:0005515
Stsc30226g00042 498 Pfam Protein tyrosine and serine/threonine kinase 79 317 IPR001245 GO:0004672|GO:0006468
Stsc30226g00042 498 ProSiteProfiles Protein kinase domain profile. 66 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30226g00042 498 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 28 497 IPR045845 GO:0004672|GO:0009742
Stsc30226g00042 498 FunFam probable serine/threonine-protein kinase At5g41260 143 334 - -
Stsc30226g00042 498 Gene3D Transferase(Phosphotransferase) domain 1 143 335 - -
Stsc30226g00042 498 FunFam probable serine/threonine-protein kinase At4g35230 38 141 - -
Stsc30226g00042 498 Gene3D Phosphorylase Kinase; domain 1 37 141 - -
Stsc30226g00042 498 SUPERFAMILY TPR-like 397 492 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30226g00042 Stsc-Chr30226 193312 197627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30226g00042 21 317 Glycoside Hydrolase AT3G07070 32.727 1.17e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Stsc30226g00042 PK_Tyr_Ser-Thr 7.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30226g00042 - - gmx:732542 825.469