Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30226g00030 ATGAGACACCATAGTTTTTGGGATAACTTTATTAACATGCATGGATTTCGATTAACAACTATTTCTCTTCCTCTTCCTCTTCCTCTTCCTCTCACTTCCCCCAACAACTTCCTTTCTCACACTCAGACAAATCTATGCCTGAAATACCCGTCACTTTCTTTAATACCCATTTACAAATATACATATGCAAGTTCTCTCAGCTTCGGGAATCATGGGATTTGGAACAAACAAGGAACACGTGGCAAAAGATCAGTGGCTGTCAGAGCAAGCCGCGGAGAGTCACCGTACGAGGTTCTTGGGGTGTCCCCATCCGCAACTTCCGACGAAATCAAAAGGGCCTATAGGAAACTTGCCCTCAAGTATCACCCCGATGTTAATAAAGAGAATAATGCTCAGGAGAAGTTTATGAGGATCAAGCATGCTTACAATACCCTGATAAATTCTAGTTCCCGCAAAAAATACGATGATTCTGGCAATCGTGGTTCTGATTATTCATATTACTCTTCTCAAAGAAGCCAAAGTAGGAATACACAACAAGAAGAAGAATTTTATGGATTAGAGGACTTCTTTAAAGATCTTCAAGAAGAATTCAAGAACTGGGAAGCCAATGCTGCTTCACAGGGAAAGCCAAAGAGCCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTTCTTGAGAAAGAACTCAATATTGTTGATACAGAAGATGATCAAAATAACAATAATAAAACAACAGCTCAAGGTAGAAATCAATCTAACATGTCTGGGACAGGCACACCCGATAATGAAGCTGGCAAAGGAAAATCAAACATTGAGGATAACCTTGATGATATAGAAGCCACTCTGGCTCAGTTAAAGAAGGAATTAGGCTTATAG 885 0.4011 MRHHSFWDNFINMHGFRLTTISLPLPLPLPLTSPNNFLSHTQTNLCLKYPSLSLIPIYKYTYASSLSFGNHGIWNKQGTRGKRSVAVRASRGESPYEVLGVSPSATSDEIKRAYRKLALKYHPDVNKENNAQEKFMRIKHAYNTLINSSSRKKYDDSGNRGSDYSYYSSQRSQSRNTQQEEEFYGLEDFFKDLQEEFKNWEANAASQGKPKSLWEELAEIGEEFVEFLEKELNIVDTEDDQNNNNKTTAQGRNQSNMSGTGTPDNEAGKGKSNIEDNLDDIEATLAQLKKELGL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30226g00030 294 PRINTS DnaJ domain signature 96 114 IPR001623 -
Stsc30226g00030 294 PRINTS DnaJ domain signature 130 150 IPR001623 -
Stsc30226g00030 294 PRINTS DnaJ domain signature 114 129 IPR001623 -
Stsc30226g00030 294 PRINTS DnaJ domain signature 150 169 IPR001623 -
Stsc30226g00030 294 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 63 253 - -
Stsc30226g00030 294 CDD DnaJ 95 147 IPR001623 -
Stsc30226g00030 294 Gene3D DnaJ domain 92 206 IPR036869 -
Stsc30226g00030 294 MobiDBLite consensus disorder prediction 161 179 - -
Stsc30226g00030 294 Coils Coil 271 291 - -
Stsc30226g00030 294 ProSitePatterns Nt-dnaJ domain signature. 135 154 IPR018253 -
Stsc30226g00030 294 MobiDBLite consensus disorder prediction 238 267 - -
Stsc30226g00030 294 SMART dnaj_3 93 150 IPR001623 -
Stsc30226g00030 294 SUPERFAMILY Chaperone J-domain 94 161 IPR036869 -
Stsc30226g00030 294 FunFam Chaperone DnaJ-domain superfamily protein 91 206 - -
Stsc30226g00030 294 ProSiteProfiles dnaJ domain profile. 94 158 IPR001623 -
Stsc30226g00030 294 MobiDBLite consensus disorder prediction 235 278 - -
Stsc30226g00030 294 MobiDBLite consensus disorder prediction 149 179 - -
Stsc30226g00030 294 Pfam DnaJ domain 95 155 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30226g00030 Stsc-Chr30226 142827 145017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30226g00030 96 155 C2H2 Transcription Factor Family AT1G74250 40.909 1.66e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30226g00030 - - adu:107461539 418.313