Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30226g00028 ATGGGAGAAGAGGTTAAGATCGCCGACTACCAAGGCGGCGGCGGCGACGACGAGCGCGTTTCCGAGTGGGAGCTTGGCCTCCCCTCCGCCGCCGACCTTCCGCCGCTCTCTCAGGCCCTGATCCCGCCGGAGCTCGCATCCGCCTTCAGCATCTCCCCGGAGCCCTTCAGGACTCTCCTCGACGTCAACCGCGCCTCGCAAGACACCATCTCCGCCATCCGCGGCGGCGCCTCCCAGGCCTTCTCCTCCAGCAATTTCCAACTCGACGACCGTGCCACCGTGCTGGAGGCCGACGCCGCGGCGTTTGCCGATGAGGAATTAGAGCCCGATCGAGATGGCTCCGGCTCTGATTCTAGGAAGCTACGGAAGATCGACAGCACCGCCGAGGAGGCCGATTCGGCAGCTCCTCCGGCCAACGACGATCCCTCCGCCCGGTCGATGAAGCGGCCGCGCCTCGTGTGGACGCCTCAGCTGCACAAGCGCTTCGTCGACGTGGTGGCGCACCTCGGAATCAAGAACGCAGTGCCGAAGACGATTATGCAGCTGATGAACGTAGAAGGATTGACTCGCGAGAACGTTGCGAGCCATCTTCAGAAATACCGCCTTTACTTAAAGCGAATGCAAGGGTTGTCGAACGAAGGTCCTTCTTCCTCTGACCAGCTATTCGCGTCGACGCCTGTGCCGCAGAGCTTGCACGAGTCTGGCGGCGGCGGCGGTGGCGGTGGAAGCGCAGGGCATTCTCATGGAAACGGACACCTTCCGGTTCCAATTCCGTTGCCTTATCCACCTCCGCCGGCGATGATGCCAATGCCGATGCTGGGAATGCCTCCGATGGGGATGACCGTAGGGAACCACCACGGTTTCAACTCGTTGGGTTCGCAACGGGATTGGTCCGGTGCGAATAAGTTCGGTTCGGTTGTTTCGTACCCTCACGGCGTGACTCCTAGTGATAAATGA 957 0.6165 MGEEVKIADYQGGGGDDERVSEWELGLPSAADLPPLSQALIPPELASAFSISPEPFRTLLDVNRASQDTISAIRGGASQAFSSSNFQLDDRATVLEADAAAFADEELEPDRDGSGSDSRKLRKIDSTAEEADSAAPPANDDPSARSMKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHESGGGGGGGGSAGHSHGNGHLPVPIPLPYPPPPAMMPMPMLGMPPMGMTVGNHHGFNSLGSQRDWSGANKFGSVVSYPHGVTPSDK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30226g00028 318 MobiDBLite consensus disorder prediction 210 257 - -
Stsc30226g00028 318 FunFam Two-component response regulator 145 208 - -
Stsc30226g00028 318 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 16 287 IPR044841 GO:0003700|GO:0006355
Stsc30226g00028 318 MobiDBLite consensus disorder prediction 210 231 - -
Stsc30226g00028 318 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30226g00028 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 205 IPR017930 -
Stsc30226g00028 318 Pfam Myb-like DNA-binding domain 153 201 IPR001005 -
Stsc30226g00028 318 Gene3D - 146 208 - -
Stsc30226g00028 318 SUPERFAMILY Homeodomain-like 147 206 IPR009057 -
Stsc30226g00028 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 150 202 IPR006447 GO:0003677
Stsc30226g00028 318 MobiDBLite consensus disorder prediction 104 129 - -
Stsc30226g00028 318 MobiDBLite consensus disorder prediction 103 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30226g00028 Stsc-Chr30226 138411 141386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30226g00028 1 228 G2-like Transcription Factor Family AT3G46640 59.756 6.50e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc30226g00028 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30226g00028 - - zju:107411020 359.762