Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30226g00025 | ATGAACTCGGACATAACACACGCCGCCACGGCGTCGTATTGGTGTTACAGCTGTACACGTTTCGTACACCTTCTCGACCGACACGACGTCGTTTGCCCTCACTGCCAAAGCGGTTTCGTTGAAGAGATCCATGCCGGTCACTCCCCAGCCATGTCTCTCTTCGCCGACGGTCTTCAAGCATCTCGCCGCCAAGGCTTCCGCCGGAGGCGCCGAAACGCCGGCAGCCGCTCGCCGTTTAACCCGGTTATTGTTCTACGTGGACCAGGGGAGGATGGCGCTGCCGGAGGAGGGGATAACGAGGCTTCCACTTTCGAGTTGTACTACGACGACGGCGACGGTTCTGGTCTTCGTCCTCTTCCGCCGACGATGTCGGAGTTCTTGCTCGGATCTGGATTCGATAGGTTACTAGAGCAGTTTTCTCAGATCGAGATCAACGGATTTGGAAGGCCGGAGAATCCGCCGGCTTCGAAGGCGGCGATAGAGTCAATGCCGACGGTTGAGATCGGAGGCTCTCACGTGGAAACGGAAACTTACTGCGCCGTGTGCAAGGAAGCTTTCGAGCTCGGTGCGGAGGCGCGTGAGATGCCGTGCAAACACCTTTACCACTCCGATTGCATCATGCCGTGGCTCACGATGCGGAACTCGTGCCCTGTGTGCCGCCACGAGCTGCCGTCCGATCAGAACTCAGCGGAAGGGAGAGTCGCCGGTCAGATCGATGAGGAAGCGGTAGGGTTGACCATATGGAGGTTGCCTGGAGGCGGTTTCGCCGTCGGGAGATTCACCGGCGGCAGAAGATCCGGCGAAAACCGTTTGCCTGTCGTGTATACCGAGATGGACGGCGGAGGCAGCGGTGGAAGCAATGGTGGAAACTCAAACGGTGGTTCTAGGAGAATATCCCGCGCAGTTGGAAGCAGTAGGGTTAGGGAGAATCGCGGAATTGGAAGAATTTTCCGTAATTTCTTTTCTTTCTTCGGGAGAATTGGATCTAGGTCACGTTCGTCTTCGTCTTCGTCATCGTCGTATTCAGGTTCTGAGCCTGGATCAGTTAGTAGAAGTCACAGCCATTCAAGTTCGTTTTTCAATAGAAACTCAGGGAGAAGAAGAACTTTTGTCTTGGATGATTGA | 1125 | 0.5538 | MNSDITHAATASYWCYSCTRFVHLLDRHDVVCPHCQSGFVEEIHAGHSPAMSLFADGLQASRRQGFRRRRRNAGSRSPFNPVIVLRGPGEDGAAGGGDNEASTFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEINGFGRPENPPASKAAIESMPTVEIGGSHVETETYCAVCKEAFELGAEAREMPCKHLYHSDCIMPWLTMRNSCPVCRHELPSDQNSAEGRVAGQIDEEAVGLTIWRLPGGGFAVGRFTGGRRSGENRLPVVYTEMDGGGSGGSNGGNSNGGSRRISRAVGSSRVRENRGIGRIFRNFFSFFGRIGSRSRSSSSSSSSYSGSEPGSVSRSHSHSSSFFNRNSGRRRTFVLDD | 374 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30226g00025 | 374 | SMART | ring_2 | 179 | 219 | IPR001841 | - | |
Stsc30226g00025 | 374 | MobiDBLite | consensus disorder prediction | 274 | 305 | - | - | |
Stsc30226g00025 | 374 | CDD | RING-H2_RNF126-like | 179 | 220 | - | - | |
Stsc30226g00025 | 374 | MobiDBLite | consensus disorder prediction | 67 | 96 | - | - | |
Stsc30226g00025 | 374 | Pfam | Protein of unknown function (DUF1117) | 243 | 363 | IPR010543 | - | |
Stsc30226g00025 | 374 | Pfam | Ring finger domain | 178 | 220 | IPR001841 | - | |
Stsc30226g00025 | 374 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 226 | IPR013083 | - | |
Stsc30226g00025 | 374 | Pfam | zinc-ribbon | 12 | 43 | IPR039525 | GO:0061630 | |
Stsc30226g00025 | 374 | FunFam | E3 ubiquitin-protein ligase RING1-like | 141 | 226 | - | - | |
Stsc30226g00025 | 374 | MobiDBLite | consensus disorder prediction | 283 | 299 | - | - | |
Stsc30226g00025 | 374 | MobiDBLite | consensus disorder prediction | 328 | 363 | - | - | |
Stsc30226g00025 | 374 | SUPERFAMILY | RING/U-box | 159 | 226 | - | - | |
Stsc30226g00025 | 374 | ProSiteProfiles | Zinc finger RING-type profile. | 179 | 220 | IPR001841 | - | |
Stsc30226g00025 | 374 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 42 | 224 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30226g00025 | Stsc-Chr30226 | 120379 | 121503 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30226g00025 | 118 | 231 | C3H Transcription Factor Family | AT5G01980 | 43.860 | 1.66e-27 | 111 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30226g00025 | K11982 | - | gmx:100792874 | 414.075 |