Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30226g00025 ATGAACTCGGACATAACACACGCCGCCACGGCGTCGTATTGGTGTTACAGCTGTACACGTTTCGTACACCTTCTCGACCGACACGACGTCGTTTGCCCTCACTGCCAAAGCGGTTTCGTTGAAGAGATCCATGCCGGTCACTCCCCAGCCATGTCTCTCTTCGCCGACGGTCTTCAAGCATCTCGCCGCCAAGGCTTCCGCCGGAGGCGCCGAAACGCCGGCAGCCGCTCGCCGTTTAACCCGGTTATTGTTCTACGTGGACCAGGGGAGGATGGCGCTGCCGGAGGAGGGGATAACGAGGCTTCCACTTTCGAGTTGTACTACGACGACGGCGACGGTTCTGGTCTTCGTCCTCTTCCGCCGACGATGTCGGAGTTCTTGCTCGGATCTGGATTCGATAGGTTACTAGAGCAGTTTTCTCAGATCGAGATCAACGGATTTGGAAGGCCGGAGAATCCGCCGGCTTCGAAGGCGGCGATAGAGTCAATGCCGACGGTTGAGATCGGAGGCTCTCACGTGGAAACGGAAACTTACTGCGCCGTGTGCAAGGAAGCTTTCGAGCTCGGTGCGGAGGCGCGTGAGATGCCGTGCAAACACCTTTACCACTCCGATTGCATCATGCCGTGGCTCACGATGCGGAACTCGTGCCCTGTGTGCCGCCACGAGCTGCCGTCCGATCAGAACTCAGCGGAAGGGAGAGTCGCCGGTCAGATCGATGAGGAAGCGGTAGGGTTGACCATATGGAGGTTGCCTGGAGGCGGTTTCGCCGTCGGGAGATTCACCGGCGGCAGAAGATCCGGCGAAAACCGTTTGCCTGTCGTGTATACCGAGATGGACGGCGGAGGCAGCGGTGGAAGCAATGGTGGAAACTCAAACGGTGGTTCTAGGAGAATATCCCGCGCAGTTGGAAGCAGTAGGGTTAGGGAGAATCGCGGAATTGGAAGAATTTTCCGTAATTTCTTTTCTTTCTTCGGGAGAATTGGATCTAGGTCACGTTCGTCTTCGTCTTCGTCATCGTCGTATTCAGGTTCTGAGCCTGGATCAGTTAGTAGAAGTCACAGCCATTCAAGTTCGTTTTTCAATAGAAACTCAGGGAGAAGAAGAACTTTTGTCTTGGATGATTGA 1125 0.5538 MNSDITHAATASYWCYSCTRFVHLLDRHDVVCPHCQSGFVEEIHAGHSPAMSLFADGLQASRRQGFRRRRRNAGSRSPFNPVIVLRGPGEDGAAGGGDNEASTFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEINGFGRPENPPASKAAIESMPTVEIGGSHVETETYCAVCKEAFELGAEAREMPCKHLYHSDCIMPWLTMRNSCPVCRHELPSDQNSAEGRVAGQIDEEAVGLTIWRLPGGGFAVGRFTGGRRSGENRLPVVYTEMDGGGSGGSNGGNSNGGSRRISRAVGSSRVRENRGIGRIFRNFFSFFGRIGSRSRSSSSSSSSYSGSEPGSVSRSHSHSSSFFNRNSGRRRTFVLDD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30226g00025 374 SMART ring_2 179 219 IPR001841 -
Stsc30226g00025 374 MobiDBLite consensus disorder prediction 274 305 - -
Stsc30226g00025 374 CDD RING-H2_RNF126-like 179 220 - -
Stsc30226g00025 374 MobiDBLite consensus disorder prediction 67 96 - -
Stsc30226g00025 374 Pfam Protein of unknown function (DUF1117) 243 363 IPR010543 -
Stsc30226g00025 374 Pfam Ring finger domain 178 220 IPR001841 -
Stsc30226g00025 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 226 IPR013083 -
Stsc30226g00025 374 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Stsc30226g00025 374 FunFam E3 ubiquitin-protein ligase RING1-like 141 226 - -
Stsc30226g00025 374 MobiDBLite consensus disorder prediction 283 299 - -
Stsc30226g00025 374 MobiDBLite consensus disorder prediction 328 363 - -
Stsc30226g00025 374 SUPERFAMILY RING/U-box 159 226 - -
Stsc30226g00025 374 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Stsc30226g00025 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 42 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30226g00025 Stsc-Chr30226 120379 121503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30226g00025 118 231 C3H Transcription Factor Family AT5G01980 43.860 1.66e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30226g00025 K11982 - gmx:100792874 414.075