Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30226g00010 ATGGCTGATGATCCAAGCCATGGTGGAAATCTGCCTACTGATTTCACAACTTGTAGGGAGGAAAACAACCCTCCCTTGGATGAGACTGAGAGTGATTTCTCTGCTGCAGCCCTGAACTACATAGATAACATGCTGATGAAGGAGAACATTGAGGAAGAGTACAACATCTTGCAAGATTCCTTAGCTCTCCAAGCAGCTGAGAAATCATTATATGATGCCATTGGTGAGAGTTACCCTTCTTCTGCCTCTACTTTGCCTTCTTCAACTACTTCTATCCAGCAACATCTTCTTCAGAACTACCCCAATGTGGAGAGCCCTGGAGATAGTAATAGCAGTGCTAGTTCTGGAAGCACTTTTGCCACCACCAATACTACCAGCTCTGCTGACTCCTTCTGGAGCGGTTTTGATCTTTCTATGATTCCATTGATGCCAAACACTTTACCTTTTCCTGATAACTCTAATTTTCAGTCCAATCCATCCTCCATCACCCCCCAATCTTACCACACAGGAAGTGACTTCACTGCCACAAACAATGATAGTGGATTAGGACAGGTGGTGATTAAGACTGAAGAAATTGATTATGATTTCGACGAAGAGGAAGAGGAGGAGGTCCAATTTCTTGCTGATGCCACAGGAAGCAGTTGCAGGCAATCTGCATTGTACATGGATGACACTGAGCTATCAGAATTTTTCGATAAGGTACTCCTTGGAACTGGATTGGGAACATCAAAATCTGAAGAAGAAGTTCCAAAAGACTCTCGCGGTAACAAGAGCCGTGCAAGGAAAAGGAAGGAGAAGAATGATGAGGAAGTGATTGATCTGAGGACACTGTTGATGCAATGTGCACAAGCAGTTTCTTCTGATAACCGTCCAATGGCAAAGGAGTTATTGATGCAGATCAAGCTGCATTCTTCTCCAACAGGTGATGCAACTCAGAGATTGTCTCATTGCTTTGCAAATGCCCTTGAAGCACGCATGGCAGGGACAGGTACACACATTCATAGTGCCTTATCCACAAATAGGCCCTCTACTTCTGATATGGTTAAGGCCTACCAAATGTATACATCAGCTTGTCCATTTGACAAGTTTGGAATCAGATTCTCAATCAACTCAATTTACAATTTGGCCAAGGAAAATGTGCATACTATTCACATTGTCGAATTTGGCATCCGCTATGGCTTCAAGTGGCCTGGATTTATATCTCGCTTATCCAATCGCCTATCCAATCGCCCCGGTGGGCCTCCGAAGCTTCGCATCACGGGGATAGAGTATCCACTACCTGGTTTGAAGCTTGAGGAAACAGGGCAATGCTTAGCAAGGTATTGTGAGAGATTCAAGGTCCCTTTTGAGTTTAATGCTATTGTTGCAAAGAAATGGGAGAGAATCAAGGTTGAGGATCTCAAGTTAAGGGAGAATGAGTTTGTAGCTGTGAATTGCATGTATAGGTTTGAGAATCTGCTTGATGAGACAGTAATGTTGGAGAATCCTAGAGATTCTGTTTTGGAGTTAATAAGGAAGGCTAATCCAAACATATTTGTGCATGGCATTGTGAGTGGTAAGTATGATGCTGCATTCTTTCTGACAAGGTTTAAGGAGGCAATGTTTCATTACTCAGCATTGTTTGACATGCTTGATAACACTGTTGGCCGTGATGATCCTATGAGGTTGATGTTTGAGGAGGCTATATTTGGGAAGGAAGCGATGAGTGTTGTGGCTTGTGAAGGGAATGATAGGATTGAGAGACCACACAGTTACAAGAAATGGCAGGTAAAGAACACAAGAGCAGGGTTCAGGCAGCTTCCATTGGATGAACAAGTGATTGAGATGTTCAAGGGTTTGTTGGTTGATGAAGGTTATCACAGAGATTTCATGCTTCATTCTGATGGCAAATGGCTTCTACAAGGTTGGAAGGGTAGAATCCTATATGCTTCTTCCTGTTGGGTACCTGCATAG 1953 0.4327 MADDPSHGGNLPTDFTTCREENNPPLDETESDFSAAALNYIDNMLMKENIEEEYNILQDSLALQAAEKSLYDAIGESYPSSASTLPSSTTSIQQHLLQNYPNVESPGDSNSSASSGSTFATTNTTSSADSFWSGFDLSMIPLMPNTLPFPDNSNFQSNPSSITPQSYHTGSDFTATNNDSGLGQVVIKTEEIDYDFDEEEEEEVQFLADATGSSCRQSALYMDDTELSEFFDKVLLGTGLGTSKSEEEVPKDSRGNKSRARKRKEKNDEEVIDLRTLLMQCAQAVSSDNRPMAKELLMQIKLHSSPTGDATQRLSHCFANALEARMAGTGTHIHSALSTNRPSTSDMVKAYQMYTSACPFDKFGIRFSINSIYNLAKENVHTIHIVEFGIRYGFKWPGFISRLSNRLSNRPGGPPKLRITGIEYPLPGLKLEETGQCLARYCERFKVPFEFNAIVAKKWERIKVEDLKLRENEFVAVNCMYRFENLLDETVMLENPRDSVLELIRKANPNIFVHGIVSGKYDAAFFLTRFKEAMFHYSALFDMLDNTVGRDDPMRLMFEEAIFGKEAMSVVACEGNDRIERPHSYKKWQVKNTRAGFRQLPLDEQVIEMFKGLLVDEGYHRDFMLHSDGKWLLQGWKGRILYASSCWVPA 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30226g00010 650 MobiDBLite consensus disorder prediction 150 180 - -
Stsc30226g00010 650 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 205 643 IPR005202 -
Stsc30226g00010 650 Coils Coil 47 67 - -
Stsc30226g00010 650 MobiDBLite consensus disorder prediction 242 267 - -
Stsc30226g00010 650 MobiDBLite consensus disorder prediction 100 120 - -
Stsc30226g00010 650 Pfam GRAS domain family 274 647 IPR005202 -
Stsc30226g00010 650 MobiDBLite consensus disorder prediction 1 30 - -
Stsc30226g00010 650 ProSiteProfiles GRAS family profile. 265 648 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30226g00010 Stsc-Chr30226 59865 61910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30226g00010 24 649 GRAS Transcription Factor Family AT2G29060 44.885 4.93e-180 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc30226g00010 GRAS 1.4e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30226g00010 - - aip:107614541 1008.44