Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30226g00002 ATGGGAGTTTGTCTGAGCGCCCAAGTTAAAGCTGAGAGCCCCTACAACACTGCAGGGGTGAACTCAAAGTATGTGAGCACAGATGGGAATGATCACAGTAGTACAAACAGTAAGGTTTCGTCTACCTCGATGCCACCGACCCCACGGAGTGAGGGCGAGATCTTGCAGTGTTCTATTCTAAAGAGCTTTAGTTTATCAGAACTTAAGACAGCCACAAGAAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTCGGTTCTGTTTTTAAGGGCTGGATTGATGAGAATTCATTGGTGGCTGCCAAACCTGGCACTGGCATTGTTATTGCTGTGAAGAGACTTAATCAAGATGGCTTACAGGGTCACAGGGAGTGGTTGGCTGAAGTAAACTATCTTGGACAATTTTCTCATCCTCATCTAGTGAGATTGATTGGATATTGCCTTGAAGACGAGCATCGCCTTCTAGTCTACGAGTTTATGCCTCGGGGAAGCTTAGAGAATCATCTGTTCAGGAGAGGCTCATACTTTCAACCTCTATCATGGAGTCTCCGTTTAAAGGTTGCTCTTGATGCAGCCAAAGGGCTTGCATTCCTTCACAATAACGAGACACAAGTCATTTTCCGTGATTTTAAGACTTCCAATATCTTGCTTGACTCGCATTACAATGCAAAACTTTCGGATTTCGGGCTAGCGAAGGATGGACCAACAGGAGATAAAAGTCATGTGTCAACCAGGGTGATGGGAACCTACGGATATGCAGCTCCAGAATATCTAGCTACTGGCCATCTTACTGCAAAGAGTGATGTCTATAGTTTTGGAGTAGTCCTCCTTGAAATGCTATCCGGCAAGAGGTCGGTCGACAAGAATCGGCCGACTGGACAACACAGTCTGGTGGAGTGGGCTAAACCATACCTGGCTAACAAGCGAAAGGTGTTTCGAGTTTTGGACACGCGTCTTGAAGGGCAGTACTCAATTGAAGATGCCTATAAGGTAGCCACACTCACCTTGAGATGCATATCTAGAGAATCCAAGTTTAGGCCAAACATGGACGAAGTTGTTACATTACTGGAGCAGCTGCAGGCTCCTAATGCAAATGCACACAACCGAAATAATCCTTCTTGTAATTCGTCTCGCCCTCGGAGAAGAAGCGCCGATGATGTTAGCCGGAGAAGGGCCACCCCTACAGCTTACCCTAGGCCCTCTTCTTCAACTCTATATACTTGA 1227 0.4629 MGVCLSAQVKAESPYNTAGVNSKYVSTDGNDHSSTNSKVSSTSMPPTPRSEGEILQCSILKSFSLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLVAAKPGTGIVIAVKRLNQDGLQGHREWLAEVNYLGQFSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHNNETQVIFRDFKTSNILLDSHYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRSVDKNRPTGQHSLVEWAKPYLANKRKVFRVLDTRLEGQYSIEDAYKVATLTLRCISRESKFRPNMDEVVTLLEQLQAPNANAHNRNNPSCNSSRPRRRSADDVSRRRATPTAYPRPSSSTLYT 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30226g00002 408 FunFam Serine/threonine-protein kinase BIK1 41 160 - -
Stsc30226g00002 408 MobiDBLite consensus disorder prediction 361 379 - -
Stsc30226g00002 408 MobiDBLite consensus disorder prediction 20 50 - -
Stsc30226g00002 408 PANTHER OS01G0588500 PROTEIN-RELATED 39 361 - -
Stsc30226g00002 408 CDD STKc_IRAK 81 360 - -
Stsc30226g00002 408 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Stsc30226g00002 408 MobiDBLite consensus disorder prediction 361 408 - -
Stsc30226g00002 408 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Stsc30226g00002 408 FunFam Probable serine/threonine-protein kinase PBL8 161 377 - -
Stsc30226g00002 408 SUPERFAMILY Protein kinase-like (PK-like) 53 359 IPR011009 -
Stsc30226g00002 408 Pfam Protein tyrosine and serine/threonine kinase 79 356 IPR001245 GO:0004672|GO:0006468
Stsc30226g00002 408 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30226g00002 408 MobiDBLite consensus disorder prediction 20 49 - -
Stsc30226g00002 408 Gene3D Transferase(Phosphotransferase) domain 1 161 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30226g00002 Stsc-Chr30226 8052 10932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30226g00002 61 357 Glycoside Hydrolase AT3G07070 50.000 3.50e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc30226g00002 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30226g00002 - - gmx:100798404 668.692