Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30225g00048 ATGGCTGCAAAACTTGAAGGCAGAGCTTTTCTCTCTTCCTTTGTTGATGCTGTCTTGAACAAGCTCTCTTCTGTCAAGTCAACCCCAGTTGACCCCAAGTTGCTTCGGAGGCTTAGAGCAAGTCTACGTGCCGCTCGACCTGTTCTTGATGACGCTGAGCAGAAGCAGATCAAAGATCAAGAAATCAAGAAGTGGCTTGTTGACTTCCATGATGCTCTCTATATGGCTGATGACTTGCTGGATGAGCTTTCCACAAAAGCTTCCACTCAAAGGGATCCAGGTACATGTTCTTCTTCCTGGTCTCGATATGTTGATTCCATCTTGGAAGAGAGCGATGATGATATTCAGTTAGTGAATAGCATGCAAGACATTGTTGATACACTGGAGTCTGTTGTTGAAGAGAAAGGTGATCTTGGTCTAAAAGAGGAGGTTACCAAAGATATAGAGGACATGTCATGGAGAATTCAATCTTCTCTAATTGAATGTTCTGATATATATGGCAGGGACAAAGACAAGGAGGCCATAGTTGAACTGTTGTTAGATTTTAGTACTTGTGATGATAAACTGTCTGTGATTTCTGTAGAAGGCATTGGTGGTATTGGAAAAACTACTTTGGCTCAATTGGTTTACAATGATGCCAGAGTGGAGGTAAATTTTGACATTAGAGCATGGGTTTGTGTTGCTACCAAATTTGATCCTGTTAAAGCCACAAAGGCTTTGATAGAGGAAATAACTTCTTGTTCTTGTAACATGGTTAGCTTGAACTCGCTTCAAACTGAATTGAAGGATAGGCTGACGGGAAAGACGTTCGTAATTGTTTTAGATGATGTTTGGGACAACCAACAAACTTTGTGGGACAATTTCCTAAAGCCCTTTTTGTTTGGGAATAAAGGAAGTAAAATTGTTTTAACAAGTCGCAGTGAAAATGTTGATTCTGTGGTTTCAGCTACTAATCTACATTACAAATTGGATATACTTTCTGACGAAGATTGCTGGTCAATGTTTTTGAAACATTCATCTCTTTCTACTAATTCTAGACAATATGTAACTCTAGAACAAATTGGTAGAAAATTTGTCAAAAAGTGTAAGGGGTTGCCTTTGATTGTGAAGACACTTGGGGGTTTATTACGCAACAAGTATCATGAAGAAGATTGGAAGAATGTATTGGAAAGTGAAATTTGGGAACTTTCAGAAGATGACAGTAAGATTGTTCCTGCATTAAGAGTTAGTTATCACTATCTCCCTTCACATTTAAAGAGATGTTTTGTTTATTGTTCGTTGTATCCCGAGGATTATCATTTTGACAAGGAGGAACTAATTTTGCTATGGATGGCTGAAGGTCTTTTGCAACCAACAGGAAAAAGCACATTAGAAAAAACTGGTTCTGCATATTTTAATGAGTTAGTTGCAAGATCATTTTTTCAACCTTCTAACACTAATGCCAACTTATTTGTAATGCACGATCTCATACATGATCTAGCAACCCTTTTTGCTGGAGAATTCTATTTCAGTGCCAAAAACCATGGCAATGCACCCGAGATTAGCATCAAAACTCGCCACTTGTCATATATTGCAAAGTCTTGGCATCCAATCTCAAAACTTCCGGAAGTCAGCAATGGAGCAATACATATGAGGTCATTTCTACCTATTTGTTTGTTTGCAGGTCATGGATTAACAAGAATAGAATGTGACTCTGTGCATTTTCTGCTGCATTTGAGGTTCTTAAGAGTTTTGTCATTCAAATGTTTTACTCTTAAATCATTGCCTAATTCAATAGGTGAACTGATCCATCTGCGTTATTTGGATCTCTCTTTTACACTTATTGCAACATTGCCGGAATCATTGTGTAAATTATACAATCTGCAAACACTGAAGTTGAGGAATTGCATTAAGCTAGAGATGCTTCCTAGCAGCATGCATGATCTTGTTAACTTGCGCCACCTTGACATTGAAGGAGCTTCTTGTTTGAAAGAGATGCCAAAGGAATTAAGCAAACTAAAGCATCTGAACTTCCTAAGTCAGTACATTGTTGGCAAGAATGAAGAGAATGGGATTAGAGAATTGGGAACACTAGACAGCCTTCACGGGTTGCTTTGCATTGTCAAGTTAGAGAATGTCAGCAACAGTTGTGAAGCATTGGGGGCAAAGATGGGCAATAAGAAGCACATCAACATTTTAGAATTAAAATGGCTTCCGGGTAGTGATATTGTTGATTCTCAAACTTCAAGGGATATACTCGAAAAATTACAACCTCATGGAGACTTGAATGAGCTATTGATCGAGGGCTATAAGGGTGAAACCTTTCCAGATTGGTTAGGCCAAGGCTGTTTTTCTTACATCAATATGACTAAACTGAGTCTGAATCATTGTAAGAATTGTTGTCAGCTTCCTTCATTGGGACAATTACCCTCTCTAAAGCATCTGGAGATTTCTGAATTTGATGCGTTGGAAAGAATTGGCTGTGAGTTTTACAAGAATAACAAATCATTTCAGCAAGAGACACCCTTCAAATCTCTTGAAAGTTTGACATTTGAGAGAATGGCTAGTTGGAGGGAGTGGCTTTTTTCTGATGAGTTCGATGCTTTTCCTCAGCTTAAAAGGCTTTCATTAAGAGAGTGTTCTGTGTTAACTGGAGATCTGCCTAATCATCTTCTAGCTTTAGAACAACTAACCATTGTTGAATGTGAACAACTTTCATGTTCACTGCCTAGAGCCCCCAAGCTTCATCAATTAGATGTAAAGGGTGTGAATCACATCAGAATGGAGGAGCCGCTTCATTGGGTAGTAATTGAAGGAACCAAGCTTGTGAACTCCATATTGGAGTGGCTAGCCCACACTCAACCAACTCAACTACAATGCCTAGTCATCAGAAAGTGTTCGTCGGACATATCGCTGTCAAGGGCTCATATGCTTGATTCATTACAAGAGCTGAAAATCTGGGATTGTTCAAAGTTAACATTCTCAGAGAAACTTCAACACAGGTTGCTAAGGGAGATAAATTTTTACAAGTGTGATTCACTTACTTTGTTACCATTGAAAGACCTTCCAAATCTCAGGACACTCACAATGGATGCATGTAAAAGCATTGAATCTATTGTAGTGCCACAAGATGTTGAATATGCTCTTCCATCTCTCAGTTATTTAGAGATCAAATACTGTCCTCGTTTTGTAACGTTGTCCACTCTAGTCTTGGCTACTCCCCATCTAGAGTCTTTGACTCTAATCAATTGTCCTGAAATCGATTCTTTTCCCGAAGGAAGCTTGACAATTCTTTGGATAAAAAACTGCCAGAAACTAGCAAGGTACATAACTTCAAAAGGTTTGCATTGTCGAGGCCTTACTTCTCTTATACTTTATTCATGGGATGATGTTACTTCATTCCCAAGAAAGGACTGTCTTCCTGTTTCACTTCGATCTCTATGTCTGGGAGAGTTTCCGAATCTGGAGACTCTAGACTGTGGTGGACTCCAACATCTCACCTCCCTCAAAGAATTAACTATTGAACACTGTTGGAAGCTGGAGAATATGACACAAGAAAAGCTGCCTTCCTCCATAACAGAACTCCACATCAAAGACTGTCCTTTGAGGCATAGGCTCTACCGCATGAACGACCCACGAATTCAATATGAAAATTGA 3636 0.3911 MAAKLEGRAFLSSFVDAVLNKLSSVKSTPVDPKLLRRLRASLRAARPVLDDAEQKQIKDQEIKKWLVDFHDALYMADDLLDELSTKASTQRDPGTCSSSWSRYVDSILEESDDDIQLVNSMQDIVDTLESVVEEKGDLGLKEEVTKDIEDMSWRIQSSLIECSDIYGRDKDKEAIVELLLDFSTCDDKLSVISVEGIGGIGKTTLAQLVYNDARVEVNFDIRAWVCVATKFDPVKATKALIEEITSCSCNMVSLNSLQTELKDRLTGKTFVIVLDDVWDNQQTLWDNFLKPFLFGNKGSKIVLTSRSENVDSVVSATNLHYKLDILSDEDCWSMFLKHSSLSTNSRQYVTLEQIGRKFVKKCKGLPLIVKTLGGLLRNKYHEEDWKNVLESEIWELSEDDSKIVPALRVSYHYLPSHLKRCFVYCSLYPEDYHFDKEELILLWMAEGLLQPTGKSTLEKTGSAYFNELVARSFFQPSNTNANLFVMHDLIHDLATLFAGEFYFSAKNHGNAPEISIKTRHLSYIAKSWHPISKLPEVSNGAIHMRSFLPICLFAGHGLTRIECDSVHFLLHLRFLRVLSFKCFTLKSLPNSIGELIHLRYLDLSFTLIATLPESLCKLYNLQTLKLRNCIKLEMLPSSMHDLVNLRHLDIEGASCLKEMPKELSKLKHLNFLSQYIVGKNEENGIRELGTLDSLHGLLCIVKLENVSNSCEALGAKMGNKKHINILELKWLPGSDIVDSQTSRDILEKLQPHGDLNELLIEGYKGETFPDWLGQGCFSYINMTKLSLNHCKNCCQLPSLGQLPSLKHLEISEFDALERIGCEFYKNNKSFQQETPFKSLESLTFERMASWREWLFSDEFDAFPQLKRLSLRECSVLTGDLPNHLLALEQLTIVECEQLSCSLPRAPKLHQLDVKGVNHIRMEEPLHWVVIEGTKLVNSILEWLAHTQPTQLQCLVIRKCSSDISLSRAHMLDSLQELKIWDCSKLTFSEKLQHRLLREINFYKCDSLTLLPLKDLPNLRTLTMDACKSIESIVVPQDVEYALPSLSYLEIKYCPRFVTLSTLVLATPHLESLTLINCPEIDSFPEGSLTILWIKNCQKLARYITSKGLHCRGLTSLILYSWDDVTSFPRKDCLPVSLRSLCLGEFPNLETLDCGGLQHLTSLKELTIEHCWKLENMTQEKLPSSITELHIKDCPLRHRLYRMNDPRIQYEN 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30225g00048 1211 FunFam Probable disease resistance protein At1g63360 411 496 - -
Stsc30225g00048 1211 Gene3D - 325 409 IPR042197 -
Stsc30225g00048 1211 PRINTS Disease resistance protein signature 191 206 - -
Stsc30225g00048 1211 PRINTS Disease resistance protein signature 1013 1029 - -
Stsc30225g00048 1211 PRINTS Disease resistance protein signature 264 278 - -
Stsc30225g00048 1211 PRINTS Disease resistance protein signature 362 376 - -
Stsc30225g00048 1211 Gene3D Ribonuclease Inhibitor 1104 1203 IPR032675 -
Stsc30225g00048 1211 SUPERFAMILY L domain-like 485 908 - -
Stsc30225g00048 1211 Gene3D Ribonuclease Inhibitor 992 1103 IPR032675 -
Stsc30225g00048 1211 Gene3D Ribonuclease Inhibitor 550 926 IPR032675 -
Stsc30225g00048 1211 Gene3D - 151 319 IPR027417 -
Stsc30225g00048 1211 Pfam NB-ARC domain 169 410 IPR002182 GO:0043531
Stsc30225g00048 1211 SUPERFAMILY L domain-like 940 1198 - -
Stsc30225g00048 1211 Gene3D - 410 495 IPR036388 -
Stsc30225g00048 1211 Gene3D - 11 113 - -
Stsc30225g00048 1211 PANTHER DISEASE RESISTANCE PROTEIN RP 46 897 IPR044974 GO:0006952
Stsc30225g00048 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 425 IPR027417 -
Stsc30225g00048 1211 Pfam Rx N-terminal domain 10 94 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30225g00048 Stsc-Chr30225 232041 238852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30225g00048 192 677 WRKY Transcription Factor Family AT5G45050 22.037 8.30e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30225g00048 - - ahf:112709990 1271.53