Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30225g00046 ATGGCTGCTTCTTCTTCTTCATCTTCCTCTTTATTGAATGCTCCCTGCAGAATTAAATATGATGTGTTCATCAGCTTCAGAGGAGAAGACATCCGCACTTCTTTTCTTAGCCATTTGCGAAAAGAATTGCACCGTAACTATATCGATTTCTTCCTAGACGATGAAAAAATTCACCCTGGAGATGACATTTCATCCACGCTTCTTCACGCCATTGAAGAATCTTCTACTTCATTGGTCATCTTTTCGGAAAACTATGCTTCTTCAACTTGGTGCTTGAATGAACTTGTAAAAGTAGTTGAATGCATGAAACAACATCAAAGGATTCTCATACCTGTTTTCTACAGCGTTGTTCCCTCTGATGTGCGGCATCAGAATAACTCTTTTAAGGAGGCTTTTGATAAACACCAACGCAGATTGAAGGGAGATATCGCGAAGGTGCAAAGTTGGAGATCTGCTTTAAAGGAAGCTTCTAATTTATCTGGATTTCATTATCCATCATCCAAATATTTAGATGAATCTAAATTCATTGAAGAAATTGTGAAAGATATTTCGCAGAAATTGTCAACTATTTTCTCAAGAGAATCCGAAGTTCTTGTTGGAATTGATGACAGTTTTAGAAGTATTGAATCGTTGTTGGAAATTGAATCATGCCAAGTCCGAATCATAGGAATTTGGGGGATGGGAGGAATAGGTAAAACTACCATTGCCGAATTCTTATTTGACAAATATTCTTCCCAATATGAAGCCAGTTGTATGTTGAAAAATGTAAGAGAAGAATCAGAAAAGGCTGGTGTGCCTCATTTATTTGAGAAACTTGTTTCTGAGTTATTAGAGGGAGAAAATCTTCATTTAAAAGGATCATCCAAAGCAAGATCCACTTTTTTCCAGAGAAAGTTAAGTCGGAAAAAGGTTTTCATAGTGCTTGATGATATGGGTACAGTGGAGCAGTTTGAACACCTTGCTACACAGTGGTTGGGACCGGGTAGTAGGGTCATTATAACTGCCAGAGACAAGGATGTCCTTAAAAAGGTTCATGGAATATATGAGGTCAAAGGCTTGAGCTTTGAAAATTCCCTTAAGCTTTTTTGCTTGAATGCTTTTGAGAAAGTCTATCCTGAAGCAGGATATGAAGAGGTTTCGAAAATGGCAGTGAATTATTCAAATGGCATCCCATTGGCTTTAAAAGTTTTGGGTTCTTTCTTATATTCTAAAACCATTGAAGAATGGGAGAGTACTTTGGCAAAACTGAAGATTTATCCTAACATAGACATTTTTAATGTCTTAAAGTTGAGTTATGATGGACTAGATGAGTTAGAGAGGGAGATATTTCTTGACATTGTATTTTTTTTCAAAGGAGAAAAAAAGGATGTTGTCATGCCATTTCTAGAATCGTGTGGTTTTTTCCCTGCTATTGGCATAGGCAATCTTTCTCGTAAAGCTCTTATAACTATTTCAAAGTATAATGAAATAGAAATGCATGACTTGATAGAACAAATGGGTCGAGAAATAGTCCGTCAAGAATCCATTAAAGACCCAGGAAGACGTAGCCGCTTGAGTAACACTGAGGATATCTACAATGTATTGAATAATAATAAGGGAACAGACTCAGTTGAAGGAATTGTGTTGGACATAGGTACCACACCACCGAATGTGTATGTTTCTTCAACTTTGGAGTCATTTCCAAATGAACTAAGATACTTGGAGTGGAGTGGCTGCCCTGTGAAGTCACTTCCTCCAGCGTTTCGTGCCGAGAAGCTTGTTGAGCTTTCTATGCCACGGAGCAAAGTTTCTAAACTCTGGGATGGAGTTCAGGATCTTGTAAATTTAAAGAGGATTAACCTTAATGAATGTTGGGAGCTAGTGGAGCTTCCAGATTTTACTGAGGCATCAAACCTTGAAGAAGTATACCTCAAGAATTGTGTAAGCTTGTGTGAACTTCATCCATCCATTTTATCCATCCACAAGCTTGAAACCTTAAATGTTTACGGTTGCAAAGAGCTTATGAGTCTTAAAGGCGAGATTCATTTGAAATCTCTTACGCTCCTCGATGTTCGTAATTGCTCAAACTTGAAAGAATTTTCAGTGTCATCAGAGGAATTAAAAAGTTTGGATTTCCATTGGACAATCATTCATAAGTTGCACTCATCAGTTAGCCGTCTCAGCAAACTTGTGGAGTTTGATCTATATGGTGTGAGAGTTGAAGCTCTTCCAGACGAATTGTGTCTCTTAGTATCTCTTGAGAAACTAAATCTTGAAGGATGCAAACAGTTGATTGAACTCCCTCAAAATATGAAGGCCTTATCACAGTTACAGCATCTCAACATAGCGAATTGCTGCAGCCTTCGATCTTTACCAGAGCTTCCACCTTCTATTATACATTTATCTGCCAACAACTGCACATCACTGGAGAAAATATTCAATCCAAAGGCAGTGTTAAGTTTAAATCTGATATCCATCTCATTTGAAAACTGTGTGAGGCTTGATGATTCATTCTTAGAACATGTGCATCATCCAATGATGGGAGTAGCAATTAGAAAGATGTTGCGTTGGATGGTGGAATGTAGTTTTACTCATTCCAGTTCCAGACCCAGATCCAGATATGCTGTTTACGACCCTAGTATGTTTTATCCCGGAAGCAAGATTCCATCATGGATCAAATATCAGACAGGAAGGAGTTCAGTAACTGTTGAACTTCTTGCGGATGAACCTCATTATCTGGATAGGCTAGTGGGTTTCATTTTGTGTTGTGTTGTTCATCATATTCCTTCTCAATCAGAGGCTCCTCGAAAGCAGCCTCCGGTGATCCAATGTAAATGTGATCTATGGCTTAGTAAAAGGAGTGCTAAAACGAGTGGGTTGAGCTCAGACCATGTTTGTATATGGTTTGCACAAGTTGGTAGTGATCATCGATGGCGTGACAAGAATGTTACTTTCAAATTCGAAACTTATTGCAGATCATGGGAATCAGCATCAGTTGAATGGACATTCGTTGAGTTTAAAGATGCATGGGAGGTGATAGGGTGCGGGGTTTGCCCAGTATATGCCTCGGACATTCTGGATGCCTTTCAACATGCGGATGCAGAGTTTAAGTTCTTTCATGGTGAACACAGACATGGATATATACAGATTTTGTTGAAGAATCTGTTTTCACTCTTGACCAAGTGA 3165 0.3861 MAASSSSSSSLLNAPCRIKYDVFISFRGEDIRTSFLSHLRKELHRNYIDFFLDDEKIHPGDDISSTLLHAIEESSTSLVIFSENYASSTWCLNELVKVVECMKQHQRILIPVFYSVVPSDVRHQNNSFKEAFDKHQRRLKGDIAKVQSWRSALKEASNLSGFHYPSSKYLDESKFIEEIVKDISQKLSTIFSRESEVLVGIDDSFRSIESLLEIESCQVRIIGIWGMGGIGKTTIAEFLFDKYSSQYEASCMLKNVREESEKAGVPHLFEKLVSELLEGENLHLKGSSKARSTFFQRKLSRKKVFIVLDDMGTVEQFEHLATQWLGPGSRVIITARDKDVLKKVHGIYEVKGLSFENSLKLFCLNAFEKVYPEAGYEEVSKMAVNYSNGIPLALKVLGSFLYSKTIEEWESTLAKLKIYPNIDIFNVLKLSYDGLDELEREIFLDIVFFFKGEKKDVVMPFLESCGFFPAIGIGNLSRKALITISKYNEIEMHDLIEQMGREIVRQESIKDPGRRSRLSNTEDIYNVLNNNKGTDSVEGIVLDIGTTPPNVYVSSTLESFPNELRYLEWSGCPVKSLPPAFRAEKLVELSMPRSKVSKLWDGVQDLVNLKRINLNECWELVELPDFTEASNLEEVYLKNCVSLCELHPSILSIHKLETLNVYGCKELMSLKGEIHLKSLTLLDVRNCSNLKEFSVSSEELKSLDFHWTIIHKLHSSVSRLSKLVEFDLYGVRVEALPDELCLLVSLEKLNLEGCKQLIELPQNMKALSQLQHLNIANCCSLRSLPELPPSIIHLSANNCTSLEKIFNPKAVLSLNLISISFENCVRLDDSFLEHVHHPMMGVAIRKMLRWMVECSFTHSSSRPRSRYAVYDPSMFYPGSKIPSWIKYQTGRSSVTVELLADEPHYLDRLVGFILCCVVHHIPSQSEAPRKQPPVIQCKCDLWLSKRSAKTSGLSSDHVCIWFAQVGSDHRWRDKNVTFKFETYCRSWESASVEWTFVEFKDAWEVIGCGVCPVYASDILDAFQHADAEFKFFHGEHRHGYIQILLKNLFSLLTK 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30225g00046 1054 PRINTS Disease resistance protein signature 298 312 - -
Stsc30225g00046 1054 PRINTS Disease resistance protein signature 387 401 - -
Stsc30225g00046 1054 PRINTS Disease resistance protein signature 221 236 - -
Stsc30225g00046 1054 PRINTS Disease resistance protein signature 674 690 - -
Stsc30225g00046 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 694 IPR044974 GO:0006952
Stsc30225g00046 1054 Gene3D - 352 436 IPR042197 -
Stsc30225g00046 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 446 IPR027417 -
Stsc30225g00046 1054 SUPERFAMILY "Winged helix" DNA-binding domain 423 528 IPR036390 -
Stsc30225g00046 1054 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Stsc30225g00046 1054 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 162 IPR035897 -
Stsc30225g00046 1054 Gene3D Ribonuclease Inhibitor 518 674 IPR032675 -
Stsc30225g00046 1054 Gene3D Ribonuclease Inhibitor 675 820 IPR032675 -
Stsc30225g00046 1054 SMART till_3 19 159 IPR000157 GO:0007165
Stsc30225g00046 1054 Pfam C-JID domain 876 1017 IPR045344 -
Stsc30225g00046 1054 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 189 - -
Stsc30225g00046 1054 Gene3D - 16 188 IPR035897 -
Stsc30225g00046 1054 SUPERFAMILY L domain-like 553 827 - -
Stsc30225g00046 1054 Gene3D - 189 349 IPR027417 -
Stsc30225g00046 1054 Pfam TIR domain 19 196 IPR000157 GO:0007165
Stsc30225g00046 1054 Pfam NB-ARC domain 208 417 IPR002182 GO:0043531
Stsc30225g00046 1054 Pfam Leucine Rich Repeat 585 604 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30225g00046 Stsc-Chr30225 222370 226879 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30225g00046 20 796 WRKY Transcription Factor Family AT4G12020 34.108 4.34e-109 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30225g00046 - - ahf:112728432 1460.28