Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc30225g00044 | ATGGAGGAGCTTGTGAAGATAACTGAATGCATGAAGCAATATCAAAGGATTGTCATGCCTGTGTTCTACCACGTTGAGCCTTATCAGGTAAGGCACCAGAAAGGAACATTTGCAAAGGCTTTTGATGACCACAAAAACAAGTATAAAGTAAAGAAAGCAGAGTTGCAGAAATGGAGATCCGTTTTAAAGGAGATTGCTAACATATCTGGAAATCATTATCCTTCTCAAAAATATGAAAATGAATCTGAACTCATCGAAGAAATTGTCAAGGAAATTTCGGAGAAATTACCGCGTCCTTTCTCGAATGCATCCCAAGGGCTTATAGGAATTGAAGAAAATTTGAAATGTCTTCAACCTTTAATGGAAATTGAGTCTGAGGAAGTTCGATTTGTGGGAATTTGGGGAATGGGAGGCATAGGTAAAACAACAATTGCTAAAGAAATATTTGAAAAATATGCCTGTGGATACCAAGGTTGCTGCTTTCTACATAATGTAAGAGAAGAATTGCAGAAGTGTAGTCAACATTCCTTGTATGAGAAACTTATGTCTGAACTACTTAAAGGAGAATATCACCTTGTGAATGGCTCAAGCCAAGCAAGATTAGCAAATTTAAGAGAAGGATAA | 624 | 0.3686 | MEELVKITECMKQYQRIVMPVFYHVEPYQVRHQKGTFAKAFDDHKNKYKVKKAELQKWRSVLKEIANISGNHYPSQKYENESELIEEIVKEISEKLPRPFSNASQGLIGIEENLKCLQPLMEIESEEVRFVGIWGMGGIGKTTIAKEIFEKYACGYQGCCFLHNVREELQKCSQHSLYEKLMSELLKGEYHLVNGSSQARLANLREG | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc30225g00044 | 207 | Coils | Coil | 75 | 95 | - | - | |
| Stsc30225g00044 | 207 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 2 | 191 | IPR044974 | GO:0006952 | |
| Stsc30225g00044 | 207 | Gene3D | - | 1 | 99 | IPR035897 | - | |
| Stsc30225g00044 | 207 | Pfam | NB-ARC domain | 117 | 153 | IPR002182 | GO:0043531 | |
| Stsc30225g00044 | 207 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 1 | 70 | IPR035897 | - | |
| Stsc30225g00044 | 207 | Pfam | TIR domain | 2 | 97 | IPR000157 | GO:0007165 | |
| Stsc30225g00044 | 207 | ProSiteProfiles | TIR domain profile. | 1 | 96 | IPR000157 | GO:0007165 | |
| Stsc30225g00044 | 207 | Gene3D | - | 100 | 206 | IPR027417 | - | |
| Stsc30225g00044 | 207 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 105 | 190 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc30225g00044 | Stsc-Chr30225 | 207356 | 208764 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc30225g00044 | 4 | 193 | WRKY Transcription Factor Family | AT4G12020 | 32.632 | 4.78e-25 | 100 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc30225g00044 | - | - | ahf:112728390 | 288.885 |